Table 3.

Tumor-specific polymorphisms and epitopes for human prostate cancers

Tumor sampleSomatic mutationsaNetMHC predicted epitopes
Synonymous/nonsynonymous in UCSC annotationSubset of nonsynonymous mutations within CCDS coding regionsTotalA1101A2402A0201
SynonymousNonsynonymousTotalHeterozygousMissenseNon-sense
1T7101010919405
2T4322204400
3T74333010514
4T5333302200
5T477770181224
6T3555413102
7T2322202110
8T204440403828242733
9T132218181623013017
10T203229292813620313
11T613999017827
12T31110101002813510
13T2555509234
14T193229292455325820
  • a Calculated from mutation data published by Ren et al. (2012), and using the epitope prediction step of the Epi-Seq pipeline to call the epitopes based on the mutation data.