Table II.

Design of Search Algorithms Based on the HLA-DQ2 Peptide-binding Motif and the tTG Specificity

DQ2 peptide-binding motif
Residue12345678910
PreferredF, W, Y, I, L, VD, E, V, L, IP, A, ED, EF, W, Y, I, L, V, M-
DQ2 epitope search algorithms
Algorithm 1XXXQXPQXF, Y, W, I, LX
Algorithm 2XXXQXPQXPF, Y, W, I, L
  • X stands for any amino acid.