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Original Article |
jradolf{at}up.uchc.edu
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Key Words: spirochete membrane protein vaccine antigenic variation opsonization
Despite the above findings, several considerations suggested to us that further examination of the cellular location of TprK was warranted. First, partial protection from challenge with virulent treponemes is not in and of itself indicative of surface location because similar levels of protection have been obtained with Ags which are not surface exposed 11. Second, although opsonophagocytosis assays are theoretically capable of identifying surface-exposed T. pallidum Ags, results with this assay have not always correlated with other surface localization methodologies 1213. Third, in our own studies 1314 using a photoactivatable lipophilic probe (3-(trifluoromethy-)-3-(m-[125I]iodophenyl-diazarene) which promiscuously labels integral membrane proteins, we were unable to detect a radiolabeled protein corresponding to TprK when either intact spirochetes or isolated T. pallidum OMs were incubated with this compound. Fourth, in a recent study, we found that Msp is predominantly periplasmic in T. denticola and does not appear to form OM hexagonal rays as reported previously 15. Lastly, results from computer analyses lend only marginal support to the notion that this polypeptide resides in the OM. PSORT (http://psort.nibb.ac.jp/form.html) predicts that TprK could be either a periplasmic (PP) or an OM protein 7; the localization scores heavily favor a PP location. TMpred (http://www.ch.embnet.org/software/TMPRED_form.html), on the other hand, predicts that TprK contains an
Here we used a battery of genetic, biological, and protein-based approaches to study the cellular location of TprK in T. pallidum. Our data unambiguously demonstrate that TprK is a periplasmic protein. Consistent with this compartmental assignment, immunization of rabbits with TprK failed to induce either opsonic Abs or protective immunity. Equally important, we found that the tprK gene was unaltered in treponemes recovered from TprK-immunized animals, indicating that sequence variation of TprK is not immunologically driven. These findings challenge the notion that TprK will be a component of an efficacious syphilis vaccine.
Transcriptional Analysis of the tpr Genes
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Introduction
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
In recent years, the quest for outer membrane (OM) proteins of Treponema pallidum as potential virulence determinants and vaccinogens has become a major focus of syphilis research. The many methodological difficulties inherent in this search, coupled with our limited knowledge of T. pallidum OM constituents, has spawned a variety of experimental approaches for identifying these proteins 1234. However, to date none of these strategies has yielded a polypeptide which is universally accepted as being surface exposed. The availability of the T. pallidum genomic sequence has opened new avenues in this search 5. Indeed, one of the most important discoveries is that T. pallidum contains 12 orthologs (designated T. pallidum repeat [Tpr] proteins) for the surface-exposed major sheath protein (Msp) of the oral commensal spirochete Treponema denticola 5, an abundant 55-kD polypeptide which reportedly forms a hexagonal array in the T. denticola OM and possesses porin-like activity 6. Consistent with this implied cellular location, Centurion-Lara et al. 7 reported that the T. pallidum Tpr paralog designated TprK is a target for opsonic Ab and that immunization with the recombinant protein conferred partial protection in the rabbit model of experimental syphilis. The subsequently reported sequence variability of tprK among T. pallidum clinical isolates and within "subpopulations" of street and laboratory strains also was believed to be consistent with the accessibility of TprK to Ab 89. Moreover, the considerable number of Tpr paralogs has engendered speculation that recombination among these genes provides a means of escaping host immune responses 5710.
-helical transmembrane domain downstream of the presumptive signal peptide which, if present, would prevent translocation of the nascent polypeptide across the cytoplasmic membrane 16.
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Materials and Methods
Top
Abstract
Introduction
Materials and Methods
Results
Discussion
References
Bacterial Strains
Treponema pallidum subspecies pallidum strain was propagated by intratesticular inoculation of adult New Zealand White rabbits as described previously 17. Animal protocols described in this work were approved by the University of Connecticut Health Center Animal Care Committee under the auspices of Animal Welfare Assurance no. A3471-01. Escherichia coli strain DH5
was the recipient strain for recombinant constructs and was grown in Luria-Bertani (LB) broth with appropriate antibiotic supplementation.
Determination of Primer Efficiency.
The amplification efficiency of the primer pairs used for reverse transcription (RT)-PCR was determined with limiting dilutions of T. pallidum DNA using amplification conditions identical to those used in the RT-PCR experiments (see below). The densitometric signal of the resolved tpr PCR products, measured by an Alpha Innotech ChemiImager 4400 (Alpha Innotech Corporation), was divided by the signal of the fla PCR product amplified from equivalent amounts of DNA, and expressed as the efficiency of the primer pair (Table ).
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Construction of PhoA Fusions
The plasmids pKS/pho and pSK/pho containing the leader-less alkaline phosphatase (phoA) gene of E. coli in the multiple cloning site of pBluescript have been described previously 19. Using primers K1-5', K2-5', K3-5', and K1-3', three in-frame tprK–phoA fusions were generated by amplifying and cloning DNA containing codons 21 through 61 of the TprK open reading frame (ORF) along with various amounts of upstream DNA into the Xba1 and BamH1 sites of pKS/phoA and pSK/phoA. E. coli clones harboring sequenced PhoA constructs were plated on LB agar containing 100 µg/ml of ampicillin and 40 µg/ml of 5-bromo-4-chloro-3-indolyl phosphate (Sigma-Aldrich).
Production and Purification of Recombinant Proteins
Two polyhistidine-tagged rTprK expression constructs were generated. The first encodes the full-length TprK protein downstream of a putative signal peptidase I cleavage site (LWA
Q). The second encodes the central region (amino acids 36–350) of TprK as per Centurion-Lara et al. 7. Although this region was originally annotated as the "variable" domain 7, we refer to it as the "central" domain to avoid confusion with the recently described seven discrete regions of variability (V1–V7) present in different TprK alleles 89. DNAs encoding the TprK full-length protein and central domain were amplified from Nichols-Farmington T. pallidum DNA using primer pairs K-full-5'/K-full-3' and K-cen-5'/K-cen-3', respectively, and cloned into EcoR1/BamH1-digested pProEx-Htb (GIBCO BRL). DNA encoding the mature FlaA protein was amplified with primers FlaA-5' and FlaA-3' and cloned into BamH1 cut pProEx-Hta (GIBCO BRL). Recombinant TprK clones were completely sequenced in both directions to verify the identity and fidelity of the cloned PCR products; for both the full-length and central domain fusions, the deduced amino acid sequences were identical to those of T. pallidum (Nichols-Farmington) TprK (see Fig. 8). Fusion proteins were expressed by the addition of isopropylthiogalactopyranoside to 1 mM and purified on a Ni-NTA matrix (QIAGEN) according to the manufacturer's instructions for insoluble proteins. The identities of the purified rTprK full-length and central domain proteins were confirmed by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry at the Keck Foundation Biotechnology Resource Laboratory at Yale University.
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ELISA for Detection of Anti-TprK Ab
ELISAs were performed as described previously 13. The wells of microtiter plates coated with dilutions (100 ng/well to 1 pg/well) of full-length, or central domain rTprK were incubated with 1:50 or 1:1,000 dilutions of either NRS, IRS, IRS depleted of anti-TprK Ab (see below), rat, or rabbit anti-TprK antisera.
Immunoblot Analysis
SDS-PAGE of samples followed by transfer to nitrocellulose membranes was preformed as described previously 14. Blots were incubated with 1:1,000 dilutions of rat antisera or 1:10 dilutions of hybridoma supernatant and subsequently developed by either colorimetric (FlaA and Tp47) or chemiluminescent (TprK) methods as described previously 1418.
Triton X-114 Phase Partitioning
Freshly extracted T. pallidum was solubilized overnight at 4°C in PBS containing 2% Triton X-114 (octylphenoxypolyethoxyethanol). Insoluble material was removed by centrifugation and the supernatant was phase separated as described previously 13. The resulting fractions were analyzed by immunoblot.
Proteinase K Digestion
Proteinase K (PK) digestion was performed as described previously 1321. Freshly isolated T. pallidum were centrifuged at 20,000 g for 15 min and resuspended in PBS containing 1 mM CaCl2 and 5 mM MgCl2. After addition of either PBS, PK to 0.4 mg/ml, or PK plus Triton X-100 (t-octylphenoxypolyethoxyethanol) to 0.01%, spirochetes were incubated at 37°C for 30 min followed by the addition of PMSF to 1 mg/ml. Lysates of untreated, PK-treated, and Triton/PK-treated T. pallidum were analyzed by immunoblot.
Indirect Immunofluorescence of T. pallidum Encapsulated in Gel Microdroplets
Preparation of agarose-encapsulated treponemes has been described previously 1317. To discriminate between surface and subsurface exposure of TprK by individual spirochetes, encapsulated organisms were simultaneously probed with 1:30 dilutions of both rat anti-TprK and rabbit anti-TpEf antisera in the absence or presence of 0.05% Triton X-100. After a 1-h incubation and three gentle washes, the beads were incubated with 3 µg of biotinylated goat anti–rat IgG, washed, and then incubated with 3 µg of streptavidin-Alexa® 546 conjugate (Molecular Probes) and 3 µg goat anti–rabbit conjugated to Alexa® 488 (Molecular Probes). For each condition, two slides from each of three separate experiments were prepared, and
100 organisms per slide were scored for labeling with Alexa® 546 (TprK) and Alexa® 488 (endoflagella). Fluorescence emission overlap did not occur as the fluorescence of singly labeled organisms (either TprK or TpEf) was only observed with the appropriate filter.
Opsonophagocytosis Assay
With minor exception, opsonophagocytosis assays were performed as described previously 71322. In brief, rabbit peritoneal macrophages were incubated with T. pallidum (10 organisms per macrophage) in the presence of 10% heat-inactivated (56°C for 30 min) NRS, IRS, or rabbit anti-TprK antisera. After incubation with T. pallidum, macrophages were washed, fixed, and processed for immunofluorescence microscopy using HSS and FITC-conjugated goat anti–human IgG as described previously. In a separate series of experiments, opsonophagocytosis assays were performed using IRS from which anti-TprK Ab had been removed by two sequential rounds of incubation with purified full-length rTprK. In the first round, 40 µg of pelleted, insoluble TprK protein was resuspended in 1 ml of pooled IRS as a colloidal solution and incubated for 2 h followed by two 30-min centrifugations at 100,000 g to remove rTprK and bound Ab. The supernatant was further depleted by incubation with 40 µg of rTprK immobilized on a nitrocellulose membrane (Schleicher & Schuell). After centrifugation at 25,000 g, the supernatant was quantitatively recovered. Depletion of TprK immunoreactivity was confirmed by ELISA using both the full-length (see Fig. 3 B, inset) and central domain (data not shown) recombinant proteins and by immunoblot analysis (data not shown).
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Nucleotide Sequence Analysis
TprK genes were amplified with primers K1-5'/Kseq-4 or TprK5'/TprK3' (Table ) and the Expand High Fidelity PCR system (Boehringer). PCR was performed as follows: 94°C for 2 min followed by 35 cycles of 94°C for 10 s, 65°C for 10 s, 72°C for 2 min followed by a single terminal extension for 7 min at 72°C; products were TA cloned or purified using the Concert Rapid PCR purification system (Life Technologies). All DNAs were extracted with fresh reagents in a PCR-dedicated clean room. Sequencing was performed using the primers shown in Table and with an Applied Biosystems Inc. model 377 automated DNA sequencer with the BigDye cycle sequencing kit.
Detection of Molecular Clocks Among Protein Variants
The likelihood ratio test (LRT), a computer algorithm which can detect molecular clocks in phylogenetic reconstructions 2425, was applied to alignments of TprK, TprJ, and the P1 protein of Haemophilis influenzae. Phylogeny trees were constructed with the maximum likelihood algorithm in PUZZLE (v4.0.2; reference 26) with and without a clock assumption, using the Dayhoff model of substitution 27, gamma-distributed rate heterogeneity, 10,000 puzzling steps, and neighbor-joining reconstruction.
| Results |
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-peptide. In the SK orientation (transcription driven by the lac promoter), all of the fusions expressed PhoA activity (Fig. 2 B), strongly supporting the translational start assigned by Centurion-Lara et al. 7 and the presence of an NH2-terminal leader peptide. In the KS orientation (transcription driven by the native promoter), fusions TprK-PhoA1 and TprK-PhoA2 expressed PhoA activity, whereas fusion TprK-PhoA3, which contains only 15 bp of sequence upstream of the GTG codon, did not. This result indicates that the 78 bp of DNA deleted from TprK-PhoA3 relative to TprK-PhoA2 contains an autonomous promoter. Indeed, consensus –35 and –10 promoter elements with a 17-bp spacer were identified within this stretch; immediately upstream from the GTG start codon is a consensus ribosomal binding site (Fig. 2 B).
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TprK Is Ab Inaccessible in Intact Treponemes.
As our opsonization assays failed to indicate surface exposure of TprK, we used an alternate strategy, immunofluorescence microscopy of spirochetes encapsulated in agarose beads, to examine the cellular location of TprK 1317. This highly sensitive technique preserves the integrity of the fragile T. pallidum OM during surface immunolabeling studies. Moreover, PP proteins can be detected by permeabilizing the OM to Ab with low concentrations of nonionic detergent. To better distinguish between intact and disrupted organisms, we developed a modified procedure in which encapsulated treponemes were probed simultaneously with rat anti-TprK antisera and rabbit Ab directed against the PP endoflagella (TpEf). In the absence of detergent, 90% of the treponemes were intact (indicated by a lack of labeling with anti-TpEf Ab), whereas all detergent-treated organisms had disrupted OMs. As expected from the low levels of tprK mRNA, detection of TprK required the use of two sequential conjugates, whereas TpEf was readily detected with a single conjugate. In three separate experiments involving a total of 1,200 organisms, not a single intact organism was labeled with anti-TprK Ab. Every spirochete labeled by anti-TprK Ab had a disrupted OM. Significantly, every disrupted spirochete was labeled with anti-TprK Ab suggesting that TprK is expressed by all treponemes. Representative micrographs are shown in Fig. 4.
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As the above results suggested that tprK is not subject to immunological pressure, we next used the LRT to determine whether the variation among TprK sequences is consistent with evolutionary drift. LRT, a phylogenetic tool used in molecular evolutionary biology, can determine whether variation among related sequences has occurred at a constant or at a discontinuous rate 2425. The hypothesis underlying our LRT analysis of TprK was that proteins subject to immunological pressure would show a discontinuous rate of change and therefore not display a molecular clock. To assess this hypothesis, we tested for the presence of molecular clocks in TprK, TprJ, and the H. influenzae P1 protein. TprJ is predicted by PSORT to be anchored to the cytoplasmic membrane via an uncleaved leader peptide 57; a protein sequestered in this manner should not be subject to immunological pressure. In this regard, TprJ has been shown to be stable in T. pallidum Nichols for >1 yr despite repeated passage in rabbits 30. P1 is an OM protein with surface-exposed hypervariable domains which are known to be subject to immunological selection 31. Consistent with our hypothesis, the molecular clock was rejected for the immunologically driven variation of P1 (Table ). Both TprJ and TprK displayed a molecular clock (Table ) indicating constant rates of change consistent with evolutionary drift.
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| Discussion |
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TprK meets some of these criteria and, therefore, is a viable candidate OM protein. It is predicted 7, and has been shown here, to have a signal peptide which is likely cleaved. The mature polypeptide does not contain significant stretches of hydrophobic residues. The relatively low levels of transcript detected by RT-PCR, coupled with the need for enhanced chemiluminescence in order to detect the native protein on immunoblots, point to its low abundance in T. pallidum. Also noteworthy was the meager fourfold increase in rTprK-ELISA reactivity of IRS compared with NRS, a result indicating that the protein is poorly immunogenic during acquired experimental infection. Significantly, TprK is related to the T. denticola OM protein, Msp 7. Despite these findings, TprK has both computer-predicted and empirically revealed properties which are irreconcilable with an OM location. As noted earlier, PSORT scores for the protein heavily favor a PP location. The observations that the protein has a functional signal peptide, partitions into the Triton X-114 aqueous phase, and becomes susceptible to Ab and PK only after perturbation of the OM strongly indicate that TprK resides entirely within the PP space.
To maximize the potential for observing TprK-mediated protection, we immunized rabbits with the central domain as well as an equivalent amount of the full-length protein. Additionally, we used a 100-fold lower challenge dose (i.e., 103 treponemes per site) than was used by Centurion-Lara et al. 7, which should have biased the experiment in favor of a protective effect. Nevertheless, in two independent experiments we failed to observe any alteration of lesion development after challenge of TprK-immunized rabbits. How, then, can these observations be reconciled with the previously reported partial protection results 7? We can only speculate that minor differences in challenge protocol resulted in these conflicting levels of protection. Precedent for such disparate findings is provided by another PP protein, the treponemal glycerophosphodiester phosphodiesterase (GlpQ) homologue. Like TprK, GlpQ was initially identified as a candidate opsonic target by immunologically screening an expression library in duplicate with IRS and with a nonopsonic sera raised against heat-killed T. pallidum 47. Immunization with rGlpQ was reported to confer partial protection to homologous T. pallidum challenge, although, contrary to expectations, anti-rGlpQ Ab were not opsonic 12. Subsequently, using techniques similar to those described here, we demonstrated that native GlpQ is a lipoprotein anchored to the PP leaflet of the cytoplasmic membrane and that immunization with rGlpQ failed to induce either opsonic Ab or protective immunity 13. Thus, we can only reiterate that, in our hands, for two different proteins, both the lack of opsonic activity and protective immunity correlated with Ab inaccessibility.
As Abs do not have access to TprK within live T. pallidum, the tprK gene should not be subject to the immunological pressure applied to genes encoding surface-exposed proteins. Consistent with this notion, the tprK gene remained stable after challenge of rabbits with preexisting humoral immunity to TprK. Significantly, variation of TprK displays a molecular clock, whereas the immunologically driven variation of the H. influenzae OM protein P1 does not. As variation of TprK does not appear to be immunologically driven, the significance of the TprK variable regions (V1 to V7) remains to be determined. In light of our findings, we postulate that this variability represents evolutionary change in the regions of TprK in which strict sequence conservation is not critical for maintenance of the protein's physiological function(s).
As much of the thinking concerning TprK has been guided by the protein's homology with Msp, the finding that Tprk is periplasmic raises an apparent conceptual inconsistency. How can orthologs reside in different cellular compartments? Prior studies held that Msp was porin like, extensively surface exposed, and formed hexagonal arrays in the T. denticola OM 6. However, prompted by the discovery of the Tpr family in T. pallidum, we recently reexamined the membrane topology of Msp. In contrast to previous reports, we found that (a) the T. denticola OM does not contain a hexagonal array, (b) the array-like structure visualized in previously published electron micrographs 6 was most likely the spirochete's peptidoglycan sacculus, and (c) the majority of the Msp molecule is periplasmic with only limited regions protruding through the OM to the treponemal surface 15. Based on these more recent findings, one can envision that the significant amino acid differences between Msp and TprK (26% identical, 39% similar) allow one or more small domains of Msp to adopt the β-strand structure required for OM insertion whereas TprK would lack the comparable sequences. Moreover, this minor variance in localization could allow the presumably similar PP functions of Msp and TprK to be maintained. Despite our findings for TprK, this formulation suggests that other members of the Tpr family merit further investigation as potential rare OM proteins. Although preliminary PhoA fusion analyses indicates that all but TprA, TprB, and TprH possess NH2-terminal export signals (data not shown), most of the remaining Tpr proteins are predicted to reside in the PP either free or anchored to the cytoplasmic membrane by an uncleaved leader peptide 5. TprF and TprI appear to be notable exceptions in that they have favorable PSORT scores for OM localization.
The regions of homology among the tpr genes, coupled with the putative surface exposure of a subset of Tpr proteins, has invited speculation that the Tprs represent a recombination-based system of antigenic variation which contributes to the relapsing nature of syphilis 57. However, the existing data do not support this notion. Unlike other recombination-based antigenic variation systems in which a single allele is expressed at a given time, both we and others 10 have found that all the tpr genes are simultaneously expressed albeit at different levels. Although one could postulate that this represents a mixture of subpopulations each expressing a different Tpr, our finding that every disrupted spirochete examined by immunofluorescence was labeled by anti-TprK Abs is inconsistent with this hypothesis. Moreover, although recombination between subsets of the tprs is not conceptually impossible, multiple sequences of tprJ and tprK, which share homology with tprs G and E, and tprs A, B, H, L, respectively, show no evidence of recombination among these genes 89. Furthermore, we have shown that tprK remains entirely unaltered despite propagation in TprK-immunized animals. To search for chimeric tpr genes, we have begun using long-range PCR with primers specific for the upstream and internal sequences in a checkerboard pattern (i.e., tprA upstream forward with tprB internal reverse). With a sensitivity of 1 recombinant gene in 10,000 spirochetes, preliminary results offer no evidence for tpr recombination in either Nichols-Farmington T. pallidum or in treponemes recovered from challenged animals (unpublished observations).
| Acknowledgments |
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This research was supported in part by U.S. Public Health Service grants AI-26756 and AI-38894 to J.D. Radolf. K.R.O. Hazlett was supported by National Research Service Award (NRSA) postdoctoral fellowship AI-09973. T.J. Sellati was supported by NRSA postdoctoral fellowship AI-10573 and a research fellowship from the Arthritis Foundation.
Submitted: 6 February 2001
Revised: 21 March 2001
Accepted: 26 March 2001
Abbreviations used in this paper: GlpQ, glycerophosphodiester phospho-diesterase; IRS, immune rabbit sera; LRT, likelihood ratio test; Msp, major sheath protein; NRS, normal rabbit sera; OM, outer membrane; PK, proteinase K; PP, periplasmic/periplasm; RIT, rabbit infectivity test; RT, reverse transcription; TpEf, endoflagella; Tpr, Treponema pallidum repeat.
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