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Key Words: molecular cloning natural killer cells sialoadhesin inhibitory receptor immunoglobulin superfamily
Relevant progress has been made in recent years towards a better understanding of the molecular interactions responsible for the regulation of NK cell functions. In particular, the finding that NK cells are capable of killing target cells lacking MHC class I proteins on their surface 1 has been the basis for the identification of a series of inhibitory receptors present on NK cells that bind MHC molecules expressed on target cells. In humans, these receptors are expressed on subsets of NK cells and recognize either discrete HLA class I alleles or nonclassical HLA class I molecules 123. The first group includes members of the immunoglobulin superfamily (Ig-SF)1 that are referred to as killer inhibitory receptors (KIRs). KIRs are characterized by the ability to specifically recognize distinct groups of HLA-A 4, -B 5, or -C 6 alleles. The second group is represented by members of the C-type lectin superfamily that covalently associate to form the CD94/NKG2 receptors 789; the inhibitory CD94/NKG2A receptor has been shown to be specific for the nonclassical HLA class I molecule, HLA-E 310. More recently, several additional inhibitory receptors, either HLA class I specific or not, have been identified that may exert a regulatory activity on human NK cell function; these include, for example, the leukocyte Ig-like receptor 1/Ig-like transcript 2 (LIR-1/ILT-2 [11, 12]) and the p40/leukocyte-associated Ig-like receptor 1 (LAIR-1) 1314 molecules. All of the inhibitory receptors identified so far are characterized by one or more immunoreceptor tyrosine–based inhibitory motifs (ITIMs) in their cytoplasmic tail. Upon tyrosine phosphorylation, ITIM binds the src homology (SH)2 domains of phosphatases such as SHP-1 and SHP-2 that, in turn, cause downregulation of NK cell triggering and cytotoxicity 15.
In an attempt to identify novel receptors possibly involved in the negative regulation of NK cell function, we immunized mice with human NK cell clones and screened for mAbs capable of modulating the NK-mediated cytolysis. Using this approach, we selected an mAb (Z176) specific for a novel inhibitory surface molecule of
Purification of Polyclonal or Clonal NK and T Cell Populations.
Cytolytic Activity and Flow Cytofluorimetric Analysis.
For one- or two-color cytofluorimetric analysis (FACScanTM; Becton Dickinson), cells were stained with the appropriate mAbs followed by PE- or FITC-conjugated isotype-specific goat anti–mouse second reagent (Southern Biotechnology Associates) 17.
Biochemical Characterization of the p75/AIRM1 Molecules.
For two-dimensional peptide mapping (2DPM) analysis, the purified proteins were digested with pepsin, and peptides were analyzed by electrophoresis in the first dimension (Multiphor II; Amersham Pharmacia Biotech) followed by chromatography in the second dimension 20. NK cells (108) were stimulated or not with 100 µM sodium pervanadate 19, and 1% NP-40 lysates were immunoprecipitated with the Z176 mAb. Samples were analyzed in discontinuous SDS-PAGE, transferred to Immobilon P (Millipore Corp.), and then probed with antiphosphotyrosine mAb (PY20-HRPO; Transduction Laboratories) or anti–SHP-1 and SHP-2 phosphatases (PTP1C and PTP1D, respectively; Transduction Laboratories). The Renaissance Chemiluminescence kit (NEN) was used for detection.
cDNA Library and Screening.
DNA Sequencing.
Adhesion Assay.
Chromosomal Localization and Zoo-BlotTM.
Reverse Transcriptase PCR Amplification of AIRM1 cDNA.
75 kD (p75) termed adhesion inhibitory receptor molecule 1 (AIRM1). p75/AIRM1 is expressed on the majority of human NK cells. Molecular cloning revealed a novel member of the Ig-SF characterized by three Ig-like domains in the extracellular portion and an ITIM in the cytoplasmic tail. Although p75/ARM1 does not recognize HLA class I molecules, its amino acid (aa) sequence, together with functional data, suggests that it represents a novel member of the sialoadhesin family. In conclusion, p75/AIRM1 is a novel, HLA-independent, inhibitory receptor that may play a relevant role in the negative regulation of human NK cell functions.
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Materials and Methods
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Abstract
Materials and Methods
Results
Discussion
References
mAbs.
Z176 (IgG2b) mAb was obtained by immunizing a 5-wk-old BALB/c mouse with the NK clone SA260 (surface phenotype: CD3–CD16+, CD56+, NKp46+, NKp44+, p70/NKB1+, CD94/NKG2A+) as described previously 16. The following mAbs were produced in our laboratory: JT3A (IgG2a, anti-CD3), BAB281 (IgG1, anti-NKp46), Z231 and KS38 (IgG1 and IgM, respectively, anti-NKp44), Z199 (IgG2b, anti-NKG2A), Z27 (IgG1, anti-p70/NKB1), KD1 and c127 (IgG2a and IgG1, respectively, anti-CD16), and c218 and A6-90 (IgG1 and IgG2b, respectively, anti-CD56). The MCA531 mAb (IgM, anti-CD20) was purchased from Serotec. The D1.12 mAb (IgG2a, anti–HLA-DR) was provided by Dr. R.S. Accolla (Università di Pavia, Pavia, Italy). The HP2.6 mAb (IgG2a, anti-CD4) was provided by Dr. P. Sanchez-Madrid (Hospital de la Princesa, Madrid, Spain).
To obtain PBLs, PBMCs derived from healthy donors were isolated on Ficoll-Hypaque gradients and depleted of plastic-adherent cells. PBLs were either used directly or were incubated with anti-CD3 (JT3A), anti-CD4 (HP2.6), and anti–HLA-DR (D1.12) mAbs for 30 min at 4°C, followed by immunomagnetic depletion with goat anti–mouse coated Dynabeads (Dynal; 30 min, 4°C; reference 17). NK or T cell clones were obtained by limiting dilution in the presence of irradiated feeder cells, 1.5 ng/ml PHA (GIBCO BRL), and 100 U/ml rIL-2 (Proleukin; Chiron Corp.) as described previously 18.
NK cell clones were tested for cytolytic activity against the Fc
R+ P815 murine mastocytoma cell line in a 4-h 51Cr-release assay as described previously 2. The E/T ratio used was 8:1 in all instances.
Sepharose-protein A–coupled Z176 and Z199 mAbs or cyanogen bromide Sepharose (Amersham Pharmacia Biotech)-coupled Z27 mAb were used to immunoprecipitate specific molecules from 1% NP-40 lysates of cells surface labeled with 125I (NEN) as described previously 19. Immunoprecipitates were analyzed by discontinuous SDS-PAGE either undigested or digested with N-glycosidase F or O-glycosidase (Boehringer Mannheim) 20.
cDNA was synthesized from RNA prepared from two IL-2–activated polyclonal NK cells and inserted in the expression vector VR1012. The cDNA library, fractionated in 10 pools of 200,000 different inserts, was transfected into COS-7 cells by DEAE-dextran method and immunocytochemical staining using the Z176-specific mAb and sib selection 21.
DNA sequencing was performed using d-Rhodamine Terminator Cycle Sequencing kit and a 377 ABI automatic sequencer (Perkin Elmer-Applied Biosystems).
COS-7 cells were transfected with VR1012–AIRM1 construct by DEAE-dextran method 4. After 48 h, cells were trypsinized and analyzed by immunofluorescence staining for the expression of p75/AIRM1 molecules. Transfected cells and human RBCs were washed twice with serum-free DMEM. The COS-7 cell/RBC ratio used in the experiments was 1:20; the adhesion assay was performed for 30 min at 4°C. The binding of RBCs to COS-7 cells was quantified by counting the percentage of COS-7 cells that bound more than seven erythrocytes. Neuraminidase treatment was carried out by incubating RBCs with 0.1 U/ml of Vibrio cholera neuraminidase (Behringwerke AG) for 3 h at 37°C followed by two washes with DMEM. For cellular adhesion blocking experiments, 106 AIRM1-transfected COS-7 cells were incubated with 0.5 ml Z176 mAb supernatant for 30 min at 4°C followed by two washes with DMEM before the adhesion assay.
The Somatic Cell Hybrid blot (BIOS Laboratories), containing 20 multi-chromosomal somatic human/hamster cell hybrids plus 3 control genomic DNAs (human, hamster, and mouse) digested with EcoRI, was used to assign the AIRM1 gene to a specific chromosome. A 1203-bp cDNA probe, obtained digesting VR1012–AIRM1 construct with SalI and PstI restriction enzymes, was used to perform high stringency hybridization 22. Analysis of cross-specific conservation of AIRM1 gene was performed using Zoo-BlotTM from Clontech. This Southern blot contained genomic DNA from humans, Rhesus monkey, Sprague-Dawley rat, BALB/c mouse, dog, cow, rabbit, chicken, and Saccharomyces cerevisiae yeast. Washes were carried out under low stringency conditions 23.
RNA extracted using RNAzol (Cinna/Biotecx) and oligo (dT)–primed cDNA was prepared from polyclonal NK cell populations and clones by standard techniques. The set of primers AIRM1-up (containing the ATG initiation codon; 5' TCC AAC CCC AGA TAT GCT G) and AIRM1-down (designed in the 3' untranslated region; 5' ACA AGC CCG AGC CTC TGC) were used to amplify the AIRM1 open reading frame. 30 cycles of PCR (30 s at 95°C, 30 s at 60°C, and 30 s at 72°C) were performed using TAQ-GOLD (Perkin Elmer-Applied Biosystems) after a preactivation of 15 min at 95°C. The amplification products obtained from polyclonal NK cells populations were purified from gel, subcloned into pcDNA3.1/V5/His TOPOTM vector using the Eukaryotic TOPO TA Cloning® kit (Invitrogen), and sequenced.
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Results
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Abstract
Materials and Methods
Results
Discussion
References
Identification and Cellular Distribution of a Novel NK Cell Surface Molecule with Inhibitory Function.
Mice were immunized with the NK cell clone SA260 (surface phenotype: CD3–CD16+, CD56+, NKp46+, NKp44+, p70/NKB1+, CD94/NKG2A+), characterized by a strong cytolytic activity against the P815 murine mastocytoma cell line. After cell fusion, mAbs were analyzed for their ability to inhibit the cytotoxicity mediated by NK cell clones in a classical redirected killing assay against the Fc
R+ P815 cell line. By using this screening procedure, we isolated the Z176 mAb (IgG2b) that inhibited the cytolytic activity of the majority of the NK cell clones analyzed. Fig. 1 shows four representatives of such clones, including the immunizing SA260 clone. In three of these clones, the addition of Z176 mAb (but not of an isotype-matched anti-CD56 mAb) resulted in inhibition of the spontaneous cytolytic activity against P815 cells (Fig. 1 a). Clone D414 is representative of the infrequent NK cell clones in which no inhibitory effect could be detected. Immunofluorescence and FACS® analysis of the same clones (Fig. 1 b) revealed that Z176 mAb reacted with clones SA260, LM15, and LM8 but not with clone D414. Similar data were obtained in a large panel of NK cell clones, thus suggesting that the Z176 mAb–reactive molecule is expressed and delivers inhibitory signal in the majority of, but not all, human NK cells.
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/β+ and
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+) showed that Z176-reactive molecules are not expressed by T lymphocytes after cell activation or clonal expansion (not shown). Finally, Z176 mAb did not stain EBV-transformed B cell lines (including Raji, Daudi, and C1R) or T cell lines (such as JA3, HSB-2, CEM, MOLT-4, H9, and Jurkat). Remarkably, it also failed to stain NK cell lines, including NK3.3, NKL, and YT (not shown).
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75 kD (p75) both under nonreducing (not shown) and reducing conditions (Fig. 3 a). To analyze their glycosylation pattern, p75 molecules were treated with different enzymes. The molecular mass was not modified by treatment with O-glycosidase (not shown). In contrast, digestion with N-glycosidase revealed a protein backbone of
48 kD (Fig. 3 a), thus suggesting a relatively high N-glycosylation pattern. Finally, in two-dimensional peptide mapping (2DPM) analysis, p75 displayed a digestion pattern that was different from those of known inhibitory receptors, including p70/NKB1 and NKG2A (not shown). Altogether, these data support the notion that p75 is a novel surface molecule with inhibitory function expressed by the majority of human NK cells.
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Molecular Cloning and Characterization of the cDNA Encoding the p75 Molecule.
A cDNA library, prepared from RNA derived from 2 polyclonal NK cell populations, fractionated in 10 different pools, was transiently transfected into COS-7 cells. After 48 h, cells were tested for reactivity with Z176 mAb by immunocytochemical staining. The plasmidic DNA of the positive pool was amplified in Escherichia coli, fractionated in smaller subpools, and transfected into COS-7 cells. Six rounds of transfections and screening allowed the isolation of an individual cDNA termed AIRM1.
As shown in Fig. 4 a, COS-7 cells transfected with VR1012–AIRM1 construct were brightly stained with Z176 mAb in cytofluorimetric analysis. Cell transfectants were then surface labeled with 125I, and cell lysates were immunoprecipitated with Z176 mAb. As shown in Fig. 4 b, the immunoprecipitated molecule displayed a molecular mass slightly lower than that immunoprecipitated from NK cells. This difference in molecular mass could reflect a noncomplete N-glycosylation in COS-7 cell transfectants. Indeed, upon treatment with N-glycosidase, the molecule immunoprecipitated from AIRM1 transfectants displayed a 48-kD protein backbone identical to that of the p75 molecule isolated from NK cells.
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48 kD, thus corresponding to the protein backbone of the p75 molecule immunoprecipitated by Z176 mAb from both NK cells and p75/AIRM1 COS-7 transfectants.
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Comparison of the aa sequence of p75/AIRM1 with those of known proteins in the EMBL/GenBank/DDBJ database revealed significant similarity with the placenta antigen CD33L1 24, as well as with the myeloid lineage molecule CD33 25 (Fig. 6). In particular, both the IgV domain and the transmembrane region of p75/AIRM1 display a high degree of aa identity (55 and 61%, respectively) with CD33 molecule. On the other hand, the IgC2a and IgC2b domains display a remarkable similarity with those of CD33L1. In this context, the highest degree of aa identity (73%) was found between the IgC2a domain of p75/AIRM1 and that of CD33L1. The IgV and IgC2a domains of p75/AIRM1 contain two Cys residues at position 41 and 174. Cys residues located at the same relative positions are also present in different sialoadhesins 2627 and are likely to be involved in the formation of interdomain bridges. Altogether, these results suggest that the p75/AIRM1 molecule may represent a novel member of the sialoadhesin family.
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1.4, 1.1, and 0.7 kb, respectively (not shown). These cDNA fragments were subcloned and sequenced. The 1.4-kb product was found to correspond to the AIRM1 cloned cDNA. Moreover, the sequence analysis, performed in five different donors, revealed only an allelic variant of AIRM1 cDNA (termed AIRM1b; sequence data available from EMBL under accession no. AJ130710) characterized by two silent substitutions (codon 105, ACC instead of AAT; and codon 452, GGT instead of GGA).
Binding of AIRM1-transfected COS-7 Cells to RBCs.
Different members of the sialoadhesin family, including CD22 3233 and Sialoadhesin 3435, have been shown to mediate sialic acid–dependent binding to RBCs. As shown in Fig. 8, COS-7 cells transfected with the AIRM1 cDNA efficiently bound to RBCs. AIRM1-specific rosette formation occurred both at 4°C (Fig. 8) and at 37°C (not shown). Pretreatment of RBCs with neuraminidase abrogated their binding to AIRM1 transfectants, suggesting that adhesion occurs through a sialic acid–dependent mechanism. In addition, binding to RBCs was inhibited when AIRM1 transfectants were preincubated with Z176 mAb (but not with an isotype-matched mAb), thus indicating a direct involvement of p75/AIRM1 in the RBC–AIRM1 transfectant interaction.
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p75/AIRM1 is a transmembrane glycoprotein characterized by one IgV and two IgC2-type Ig-like domains in the extracellular portion that displays similarity with members of the sialoadhesin family. This family is composed of structurally and functionally related molecules, including MAG, Schwann cell myelin protein (SMP), Sialoadhesin, CD22, CD33, CD33L1, and Siglec-5. All of these proteins are characterized by a restricted cell expression pattern. In particular, MAG 36 and Schwann cell myelin protein (SMP) 37 are found in the nervous system on oligodendroglia and Schwann cells, respectively; CD22 is expressed on a subset of B lymphocytes 38, sialoadhesin on a subset of macrophages 39, CD33 40 and Siglec-5 31 on cells of the myelomonocytic lineage, and CD33L1 in placenta 24. Similar to these molecules, p75/AIRM1 also displays a restricted cell expression pattern, being essentially confined to NK cells. Other than their ability to bind sialic acid, limited information is available on the function of the molecules of the sialoadhesin family. The only molecule reported to display inhibitory function (i.e., similar to p75/AIRM1) is CD22 that is expressed on B cells, in which it may downregulate the B cell receptor–mediated cell triggering. CD33 is selectively expressed by hemopoietic cells, in which it represents an important marker in normal differentiation as well as in leukemia typing. In view of the similarity with p75/AIRM1, which includes the presence of an ITIM sequence in the cytoplasmic tail, it is important to reinvestigate the role of CD33, especially with respect to its possible inhibitory effect on hemopoietic cell function and/or differentiation. Experiments along this line are in progress in our laboratory.
p75/AIRM1 is encoded by a gene localized on human chromosome 19. Remarkably, genes coding for other members of the sialoadhesin family map on chromosome 19 as well. This may suggest that all of these molecules, including p75/AIRM1, may have evolved through duplication of a common ancestral gene. It is of note that other inhibitory receptors involved in the regulation of NK-mediated cytotoxicity, including KIRs, LIR/ILT, and LAIR-1, have also been mapped on this chromosome. Although not shown, the AIRM1-specific probe, under low stringency conditions, hybridized with genomic DNA from Rhesus monkey, thus suggesting a cross-species conservation between humans and monkeys.
DNA sequencing of seven cDNA clones obtained by RT-PCR experiments, performed in five different donors, revealed only an allelic variant characterized by two silent substitutions. However, considering both the relatively low number of samples analyzed and the fact that all donors belonged to the Caucasoid race, a polymorphism of the p75/AIRM1 gene cannot be ruled out. RT-PCR analysis, in addition to the 1.4-kb AIRM1 transcript, also allowed the identification of two alternatively spliced products of 1.1 and 0.7 kb, respectively. Sequence of these products revealed that the 1.1-kb fragment encoded a putative protein identical to the p75/AIRM1 but lacking the IgC2a domain (from codon 146 to codon 238) (termed AIRM2; sequence data available from EMBL under accession no. AJ130711; manuscript in preparation). The 0.7-kb amplified product contains two cDNA fragments that are both carrying an early stop codon at position 146 (EMBL accession nos. AJ130712 and AJ130713).
Consistent with the structural similarity between p75/AIRM1 and other sialoadhesins, p75/ARM1 was also found to bind RBCs. This binding was specifically inhibited by Z176 mAb as well as by the neuraminidase treatment of RBCs. These data suggest that p75/AIRM1 may function as a receptor which recognizes its putative ligand(s) in a sialic acid–dependent manner. Carbohydrate-binding proteins are known to play a role in a wide variety of biological processes involving specific cell–cell interactions. As suggested for CD22 41, it is possible that sialic acids may be required for correct orientation and presentation of the epitope (on the ligand) recognized by p75/AIRM1.
Cross-linking of p75/AIRM1 in human NK cells delivers an inhibitory signal resulting in downregulation of spontaneous NK cell–mediated cytotoxicity. An inhibitory effect could also be detected on the NK cell triggering mediated by activating receptors such as CD16, NKp46, and NKp44 (not shown). Coherent with its ability to mediate inhibition, the cytoplasmic tail of p75/AIRM1 was found to contain an ITIM that recruited the SHP-1 phosphatase upon tyrosine phosphorylation. This, in turn, is likely to inhibit downstream molecular events that are critical for the induction of NK cell–mediated cytotoxicity. One may ask the meaning of the inhibitory effect of p75/AIRM1 in NK-mediated function, and what could be the functional relationship with KIRs. KIRs appear to play a predominant role in the discrimination between HLA class I+ cells and cells that do not express sufficient amounts of HLA class I, such as tumor- or virus-infected cells. Since p75/AIRM1 does not appear to recognize HLA class I molecules, it is possible to speculate that this receptor may play a role in recognition of still undefined sialylated proteins, possibly present in normal cells that physiologically express low amounts of HLA class I molecules. The expression of ligand(s) for p75/AIRM1 may protect these cells from the NK-mediated attack. It is evident that the identification of the p75/AIRM1 ligand(s) will greatly help to clarify this issue. In addition, it is possible that p75/AIRM1 may function during stages of NK cell differentiation from immature precursors in which cells have acquired cytolytic potential but have not yet expressed HLA class I–specific inhibitory receptors. Indeed, cells with these phenotypic characteristics have recently been identified in our laboratory (our unpublished data).
In conclusion, we have identified, characterized, and cloned a novel inhibitory receptor primarily confined to human NK cells which may play a role complementary to that of KIRs in the regulation of NK cell function.
| Acknowledgments |
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Address correspondence to Lorenzo Moretta, Laboratorio di Immunopatologia, Centro Biotecnologie Avanzate, L.go R. Benzi, 10, 16132 Genova, Italy. Phone: 39-10-5737217/9; Fax: 39-10-354123; E-mail: moretta@ermes.cba.unige.it
Submitted: 18 March 1999
Revised: 2 June 1999
Accepted: 13 July 1999
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