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Articles |

Department of Biology, Xiamen University, Xiamen, Fujian 361005, People's Republic of China
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Key Words: hepatocellular carcinoma cloning tumor antigen autoantibody RNA-binding motif
Abbreviations used: CS-RBD, consensus sequence RNA– binding domain; HCC, hepatocellular carcinoma; KH, K homology; ORF, open reading frame; RACE, rapid amplification of cDNA ends; RT, reverse transcriptase.
Autoantibodies against intracellular antigens are commonly found in a number of systemic autoimmune diseases (1, 2) and have been used to screen cDNA expression libraries to isolate cDNA clones encoding target autoantigens. Such studies have revealed that many autoantigens are components of subcellular particles involved in important cell functions such as DNA replication (3, 4), DNA transcription (5–7), RNA processing (8), and cell division (9–11). Studies of autoimmune diseases such as systemic lupus erythematosus have shown that the autoantibody responses in the majority of if not all patients are targeted at multiple components present within subcellular particles. It has been well documented that autoantibodies such as anti-Sm in systemic lupus erythematosus may target several proteins in such particles, including the A, B/B', C, D, and 70-kD proteins, all of which are components of small nuclear ribonucleoprotein complexes (8). These and other observations have led to the hypothesis that an antigen-driven mechanism underlies the production of these autoantibodies (12–14) and that certain intracellular particles or their components become immunogenic because of dysregulation of their function or alterations in molecular structure or localization, leading to the provocation of an immune response (1, 12).
Autoantibodies have been described in cancer patients, including patients with leukemia, malignant melanoma, lung, breast, gastrointestinal, gynecological, nasopharyngeal, and prostate cancer, paraneoplastic neurological syndromes, hepatocellular carcinomas, and a variety of other neoplasms (15–30). On the premise that identification of the autoantigens might provide some information regarding intracellular molecules possibly engaged in the transformation process, this laboratory has focused on hepatocellular carcinoma (HCC)1 as the subject of investigation. This interest is related to the observation that in certain patients with HCC, novel autoantibody responses appeared coincident with or sometimes immediately before the clinical detection of HCC (23, 24). These observations were made possible by the availability of serial samples of stored sera from patients with chronic hepatitis and liver cirrhosis, two precursor conditions to HCC; HCC eventually occurs in
Cell Culture and Cell Extracts.
Immunofluorescence Studies.
Western Blotting.
T24 and HeLa Cell Labeling and Immunoprecipitation.
cDNA Cloning, 5' Rapid Amplification of cDNA Ends (RACE) and Sequence Analysis.
Reverse Transcription (RT)-PCR and Confirmation of p62 Open Reading Frame (ORF).
30–40% of these patients. One previously identified nuclear antigen, HCC1, is a nuclear protein with structural motifs found in the serine–arginine family of alternative splicing factors (25). Another antigen targeted by autoantibodies is a DNA-binding nuclear antigen called SG2NA, a protein highly expressed in the S and G2 phases of the cell cycle (26). In this study, an HCC serum that contained autoantibodies to a 62-kD cellular protein was used to immunoscreen a T24
zap cDNA expression library. A novel cytoplasmic autoantigen named p62 was identified. p62 is a putative RNA-binding protein, and antibodies to p62 were detected in 21% of a cohort of HCC patients from Henan Province, People's Republic of China.
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Materials and Methods
Top
Abstract
Materials and Methods
Results
Discussion
References
Sera and Antibodies.
HCC sera were obtained from 95 subjects included in an epidemiological study previously described and were from Henan Province, People's Republic of China (31). Sera from 77 patients with liver diseases (26 asymptomatic HBsAg carriers, 31 patients with acute hepatitis, and 20 patients with chronic hepatitis and liver cirrhosis), and 30 normal human sera, all from the same province, were available for these studies. All of the above sera came from the Sanitary and Anti-Epidemic Station (Henan Province). 40 normal human sera from the San Diego, CA area were also included as controls. Human prototype sera containing autoantibodies to previously identified intracellular antigens were from patients with systemic autoimmune diseases (2) and obtained from the serum bank of the Autoimmune Diseases Center of The Scripps Research Institute (La Jolla, CA).
MOLT-4 (human acute lymphoblastic leukemia), T24 (human transitional cell bladder carcinoma), HEp-2 (human epidermoid laryngeal carcinoma), HeLa (human epitheloid cervical carcinoma), HepG2 (human hepatocellular carcinoma), A549 (human lung carcinoma), and 3T3 (mouse fibroblast) cell lines were obtained from the American Type Culture Collection and cultured following the specific protocol for each cell line. Cells grown in monolayers were solubilized directly in Laemmli's sample buffer containing protease inhibitors (Boehringer Mannheim). Solubilized lysates were briefly sonicated before electrophoresis on SDS–polyacrylamide gels.
Initial identification of autoantibodies in sera was performed using methanol- and acetone-fixed commercial HEp-2 cell slides (Bion Enterprises, Ltd.). The findings were usually confirmed in other experiments using T24, HepG2, and 3T3 cells that were grown on coverslips, fixed for 5 min at –20°C in 100% methanol, and permeabilized for 3 min at –20°C in 100% acetone. As a second antibody, FITC-conjugated goat anti–human IgG (Caltag Laboratories) was applied. A titer of >1:40 dilution was interpreted as positive.
Western blotting was performed essentially as described by Chan and Pollard (32). Cell extracts were electrophoresed on SDS-PAGE and transferred to nitrocellulose paper. After preblocking with PBS containing 0.5% Tween-20 and 5% nonfat milk for 30 min at room temperature, the nitrocellulose strips were incubated for 60 min at room temperature with a 1:100 dilution of serum. As secondary antibody, horseradish peroxidase–conjugated goat anti–human IgG (Caltag Laboratories) was applied (1:2,000 dilution). The detection of immunoreactive bands was performed with an ECL kit (Amersham Corp.) according to the manufacturer's instructions and followed by autoradiography.
T24 and HeLa cells were cultured and radiolabeled with [35S]methionine. For preparation of T24 and HeLa cell extracts, cells were collected by centrifugation, combined with two times packed cell volume buffer A (10 mM Tris-HCl, pH 7.5; 150 mM NaCl, 1.5 mM MgCl2, and 0.5% NP-40), and held on ice for 10 min to allow cell lysis. The supernatant obtained by centrifugation at 10,000 g for 10 min at 4°C was used as antigen preparation in immunoprecipitation studies. Before immunoprecipitation, labeled cell extracts were precleared by adding 100 µl 10% protein A–Sepharose stock/ml extract, mixed for 5 min on ice, and centrifuged to collect supernatant. Typically, 100 µl 10% protein A–Sepharose, 500 µl buffer B (50 mM Tris-HCl, pH 7.4; 150 mM NaCl; 5 mM EDTA; 0.5% NP-40; 0.5% deoxycholic acid; 0.1% SDS; and 0.02% sodium azide) containing BSA at 10 µl (stock: 10 mg/ml), 40 µl labeled cell extract, 10 µl serum, and 10 µl protease inhibitor (Boehringer Mannheim) was added to a standard immunoprecipitation reaction. After incubation for 1 h, the immunoprecipitated beads were washed five times with 1 ml buffer B. Finally, the beads were eluted with an equal volume of 2x Laemmli's sample buffer and analyzed in SDS-PAGE followed by autoradiography.
HCC serum YZ was diluted 1:100 and used for screening a T24
zap cDNA expression library. Before screening of the cDNA library, the serum was extensively absorbed against bacteria infected with wild-type
zap phage (33). The preabsorbed serum was used to immunoscreen 3.0 x 105 recombinant plaques using 125I-labeled goat anti–human IgG as the secondary detecting reagent. Screening was carried out on duplicate filters, and one double-positive clone, JY1, was isolated and subcloned in vivo into pBK-CMV plasmid using ExAssist helper phage (Stratagene Inc.) as recommended in the manufacturer's instructions. The clone JY1 was amplified, purified, and used for sequence analysis. cDNA insert was analyzed by restriction mapping and sequencing. The clone JY1 was a partial sequence, and RACE methodology was used to obtain overlapping 5' clones using the Marathon-Ready cDNA from human colorectal adenocarcinoma SW480 cell line (Clontech). Nucleotide sequence was determined in both strands using a semiautomated sequencer from Applied Biosystems (model 373). Oligonucleotide primers were synthesized with a DNA synthesizer (Applied Biosystems; model 394). DNA and protein sequences were analyzed by the Genetics Computer Group Sequence Analysis Software Package for UNIX computers (version 7.4; 34). Alignment of protein sequences was achieved with a Multiple Alignment Program (http://dot.imgen.bcm.tmc.edu:9331/multi-align/multi-align.html; reference 35).
The ORF of p62 was reamplified and confirmed by RT-PCR using T24 cell mRNA as template. One set of sense and antisense primers was designed, and their positions with respect to the p62 full length cDNA are indicated (see Fig. 2 A): rt3 sense, 5'-TTGAATTCGCCATGGTGAACAAGCTTTACATCGGGAACC-3' and rt4 antisense, 5'-TTTATGTCGACGGTGTTGGAAGGGCTACATT-3', incorporating an EcoRI and SalI site, respectively. RT-PCR was performed using the one-tube method as described by Pfeffer et al. (36). In brief, 1 µl T24 mRNA (0.5 µg/µl), 10 µM primer (1 µl each), 1.25 U Taq polymerase (GIBCO BRL), 100 U SuperScript II RNase H–reverse transcriptase (GIBCO BRL), 20 U RNase inhibitor (Promega Corp.), 0.25 µl of 10 µM dNTPs, and 2.5 µl 10x PCR buffer containing 500 mM KCl; 100 mM Tris-HCl, pH 8.3; 15 mM MgCl2; and 0.1% gelatin were added to a final total volume of 25 µl, and the PCR steps were programmed using a thermocycler (Eppendorf). The reactions were performed at 50°C for 1 h and followed by 30 cycles at 57°C for 10 s, 72°C for 2 min, and 94°C for 10 s. RT-PCR products were analyzed by agarose gel electrophoresis.
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In Vitro Transcription and Translation.
The p62 cDNA was transcribed and translated in vitro using TnT-coupled reticulocyte lysate system (Promega Corp.) in the presence of [35S]methionine (ICN) as described (Promega Biotec). Labeled products were used as substrates for immunoprecipitation analysis.
Affinity Purification of Antibodies.
Recombinant protein was electrophoresed on 15% SDS-PAGE and transferred to nitrocellulose membranes. The membranes were cut into strips and the recombinant protein bands confirmed by Western blotting. Nitrocellulose strips were incubated with diluted serum at 1:100, and unbound antibodies were removed by washing with PBS containing 0.5% Tween-20 before elution of bound antibodies with 0.5 ml elution buffer (200 mM KH2PO4, 150 mM NaCl, and 0.1% BSA, pH 2.5). Affinity-purified antibodies were immediately neutralized by the addition of 1 M Tris-HCl, pH 8.7. The antibodies were concentrated with Centricon-30 microconcentrators (Amicon Corp.), and different dilutions (1:5, 1:25, and 1:50) were used for immunofluorescence assay and Western blotting analysis.
Rabbit Immunization.
Four female New Zealand White rabbits were immunized by subcutaneous injections of 0.5 mg of p62 recombinant protein in complete Freund's adjuvant. Rabbits were boosted two times with 0.5 mg p62 recombinant protein in incomplete Freund's adjuvant at 1-mo intervals, and blood was collected 10 d after the last booster injection.
Northern Blotting.
Nylon membranes blotted with poly A+ RNA isolated from multiple human tissues and several human cancer cell lines were obtained from Clontech. An antisense riboprobe was generated from a 480-bp fragment corresponding to the NH2-terminal domain of p62 (see Fig. 2 A) and labeled with [
-32P]UTP (Clontech) as described. In brief, the membranes were hybridized with 32P-labeled p62 riboprobe for 2 h at 74°C, washed in 2x SSC and 0.1% SDS at 74°C for 20 min and in 0.1x SSC and 0.1% SDS at 65°C for 20 min, and exposed to x-ray film for 4 h at –70°C. A 2.0-kb human β-actin cDNA provided by Clontech was used as control probe.
ELISA.
Standard protocol for ELISA was used as described by Rubin (37). Purified p62 recombinant proteins were diluted in PBS to a final concentration of 1 µg/ml for coating Immulon 2 microtiter plates (Dynatech Laboratories). Human sera diluted 1:100 were incubated in the antigen-coated wells. Horseradish peroxidase–conjugated goat anti–human IgG (Caltag Laboratories) and the substrate 2.2'-azinobis (3-ethylbenzthiazoline sulfonic acid; Boehringer Mannheim) were used as detecting reagents. Each sample was tested in duplicate, and the average OD at 490 nm was used for data analysis. The cutoff value designating positive reaction was the mean OD of normal sera + 3 SD.
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zap cDNA expression library. One positive clone was isolated from 3.0 x 105 recombinant plaques, purified to homogeneity, and subcloned in vivo into pBK-CMV. This clone, designated JY1, was a cDNA of 3.3 kb and was shown to have an apparent coding sequence with a termination codon and a long 3' UTR with a poly A tail. 5'-RACE methodology was used to obtain overlapping 5' clones using the Marathon-Ready cDNA repertoire derived from human colorectal adenocarcinoma SW480 cell line. Two overlapping independent clones were obtained and analyzed, with the longest clone, H27, containing a cDNA insert of 374 bp. An in-frame TGA stop codon at position 320 bp upstream of a methionine start codon was found. The presumptive full length cDNA is shown in Fig. 2 C. The cDNA has a 5'-UTR of 435 bp, an ORF of 1,668 bp, and a 3'-UTR of 1,564 bp. RT-PCR was performed using T24 cell line RNA as template with one pair of designed primers (rt3 and rt4, shown in Fig. 2 A). The RT-PCR products were of
1.7 kb, compatible with the size of the ORF in the isolated cDNA clone (Fig. 2 B). The ORF codes for 556 amino acids with a predicted molecular mass of 62 kD and a calculated pI of 8.59.
p62 Has RNA-binding Motifs and Is Highly Homologous to Three Other RNA-binding Proteins.
The 62-kD protein contained two types of RNA binding motifs, the consensus sequence RNA–binding domain (CS-RBD) and four hnRNP K homology (KH) domains (38). The CS-RBD domain was located in the NH2-terminal region, and the four KH domains extended from the middle region to the COOH-terminal region (Fig. 2). Three proteins were found to have high degrees of homology to p62 at both nucleotide and protein levels. Table I compares percent similarity and identity of p62 with the other three proteins. KH domain–containing protein overexpressed in cancer (Koc), a putative oncogene (39), had 66.5% identity and 80.3% similarity to p62. Zipcode binding protein (ZBP1), a β-actin mRNA-binding protein in chicken (40), had a 70.5% identity and 83.9% similarity to p62, and B3 (X. laevis TFIIIA–binding protein), an oocyte factor that binds to a developmentally regulated cis element in the TFIIIA gene (41), showed 69.7% identity and 82.7% similarity to p62. Table I also shows that other KH domain–containing proteins such as FMR1 (42), hnRNP K (43), and hnRNP X (44) showed much lower levels of homology. The sequences of p62, Koc, ZBP1, and B3 are shown in Fig. 3 A, demonstrating the CS-RBD and four hnRNP K homology domains. In addition, a nine–amino acid sequence (VGAIIGKE/KG) of unknown function previously reported in ZBP1 (40) was also found in the first three KH domains of the other three proteins. A potential REV-like nuclear export signal also found in ZBP1 protein (40) was present in position 308–319 of p62. The sequence alignments of the four proteins are depicted in Fig. 3 A, and their domain structures are shown in Fig. 3 B.
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In addition to the remarkably high percentage of similarity and identity between p62 on the one hand and ZBP1 and Koc on the other, there are several features of these proteins that are of interest. ZBP1 is a chicken protein of 68 kD which was identified through its property of binding to a conserved element in the 3' untranslated region of β-actin mRNA (40). Rabbit antibodies raised against ZBP1 polypeptides were shown to bind to β-actin mRNA in the leading edge of the lamella in cells such as chicken embryo fibroblasts and 3T3 fibroblasts (40). Studies are in progress to determine whether recombinant p62 is capable of binding in vitro to the "zipcode" element of β-actin mRNA as is the case with ZBP1.
The Koc protein was isolated following analysis of differential gene expression in pancreatic cancer tissue (39). High transcript levels of Koc were found not only in pancreatic cancer tissue but also in soft tissue sarcoma, gastric cancer, and colon cancer. Differences in mRNA expression of Koc in different tissues has been reported (39). We have also observed different transcript levels of p62 in different tissues and, in addition, high levels of expression of p62 transcript in some cell lines (HeLa, K-562, SW480, A549, and G361) but low expression in others including the promyelocytic leukemia HL-60, lymphoblastic leukemia MOLT-4, and Burkitt's lymphoma Raji. It is perhaps of some interest that the two human members (p62 and Koc) of this putative family of RNA-binding proteins appear to be associated in some way with cancer. It has recently been reported that two different Koc-homologous genes were also identified by SEREX methodology (46), but sequence information concerning these genes and their relationship to cancer are not yet available.
Previously, we reported that several patients with HCC mount de novo immune responses to nuclear antigens at the time of conversion from chronic hepatitis or liver cirrhosis to HCC (24) and that the autoantibodies that were produced against intracellular antigens might be regarded as immune system reporters of abnormal intracellular molecular events. Novel proteins that have been detected include HCC1 (25), a putative member of the SR family of alternative splicing factors, and SG2NA, a protein highly expressed in the S and G2 phases of the cell cycle (26). p62 appears to be another such molecule, but unlike the antibody responses to HCC1 and SG2NA, which were observed in individual patients, the autoimmune response to p62 was detected in >20% of one group of HCC patients, suggesting that a shared stimulus might be inciting the immune responses. This shared stimulus could be environmental in nature, but this is as yet only conjecture. An important study that could not be performed at this time was the analysis of HCC tissues to determine whether there were abnormalities in the p62 gene or in its expression, as tissue specimens were not available in this retrospective study. This will be the focus of a prospective study in newly identified HCC patients with autoantibodies to p62.
| Acknowledgments |
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Submitted: 19 October 1998
Revised: 18 January 1999
Note added in proof. While this paper was in press, an article by J. Nielsen et al. was published (Mol. Cell. Biol. 19: 1262–1270) describing a cDNA called IMP-2 (insulin-like growth factor II mRNA binding protein) that was completely identical to p62 except for an insertion of 43 amino acids between the KH2 and KH3 domains.
Preliminary report in abstract form was presented at the 37th Annual Meeting of the American Society for Cell Biology in Washington, D.C., December 13–17, 1997. Mol. Biol. Cell. 8(Suppl.):138 (Abstr.).
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