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Internal Medicine and Oncological Sciences, Department of Clinical and Experimental Medicine, University of Perugia, 06100 Perugia, Italy
| Abstract |
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Key Words: natural killer cells killer cell inhibitory receptor gene therapy retroviral vectors peptides
Abbreviations used: KIRs, killer cell inhibitory receptors; RT, reverse transcriptase; TAP, transporter for antigen presentation.
NK cells express receptors that, upon interaction with their MHC class I ligands, produce a signal inhibiting killing of the autologous cell (reviewed in references 1 and 2). One type of receptor is a lectin-like heterodimer, CD94-NKG2A, that recognizes the nonclassical MHC class Ib molecule HLA-E (3). The other is a family of Ig-like receptors designated killer cell inhibitory receptors (KIRs)1 (4–6). KIRs with two Ig domains (KIR2D) identify HLA-C allotypes: KIR2DL1 (formerly designated p58.2) recognizes group 2 HLA-C allotypes, whereas KIR2DL2 (p58.1) recognizes group 1 HLA-C allotypes. A KIR with three Ig domains, KIR3DL1 (p70/NKB1), is specific for HLA-B alleles sharing the Bw4 supertypic specificity. Therefore, the diversity of human MHC class I allotypes collapses to only three well-defined KIR supertypic ligands: group 1 HLA-C, group 2 HLA-C, and HLA-Bw4. In addition, a homodimer of molecules with three Ig domains, KIR3DL2 (p70/140), has been shown to be specific for HLA-A3 and -A11 (7). Thus, NK cells are activated in response to the missing expression of self-class I molecules on target cells, such as some allogeneic cells or tumor or virus-infected cells. KIRs also distinguish peptides bound to MHC class I molecules. NK cell recognition of class I alleles on target cells is prevented, and, consequently, NK lysis is triggered by amino acid substitutions along protective peptides loaded onto empty class I molecules at the surfaces of transporter for antigen presentation (TAP)-deficient cells (8–12). Exogenously loaded viral peptides also abrogate NK cell recognition of MHC ligands (13). Consequently, the NK cell killing of virus-infected cells (14) may be triggered by replacement of self-peptides with endogenously synthesized viral peptides.
Human gene therapy uses replication-deficient, recombinant viral vectors (reviewed in references 15 and 16). Lack of sustained exogenous gene expression may be due to several mechanisms, including specific immune reactions to the genetically modified cells. Infection of immunocompetent mice with replication-defective adenoviruses elicits a CD8+ CTL response that eliminates virus-infected cells (17–22). In humans reinfused with retrovirally infected cells, specific CTL immunity against the transgene product has been implicated in sharp reductions in survival of autologous transduced cells (23, 24). Therefore, immunogenicity of genetically modified cells may elicit specific immunity in the host and limit the stability of gene expression in vivo.
In this study, we explored the role of NK cells in the immune response to genetically modified autologous cells and used the LXSN retroviral vector because it, or other similar vectors, is currently adopted for human gene therapy protocols (24–27). These vectors are potential targets for immune recognition, as they express neo, a heterologous antibiotic (G418)-resistance gene used for selection of transfected packaging cell lines and gene marking studies in vivo (28).
We found that (i) infection with the LXSN retroviral vector makes human cells susceptible to autologous NK cell– mediated lysis, (ii) expression of the neo gene is responsible for conferring susceptibility to lysis, (iii) the effectors are NK cells that bear KIR3DL1 and exhibit HLA-Bw4 specificity, and (iv) the targets are cells from HLA-Bw4+ individuals. Finally, we found that neo protein peptides anchor to Bw4 alleles (such as B27) and interfere with KIR3DL1-mediated recognition of Bw4 alleles, i.e., they trigger NK lysis. Moreover, neo gene mutations preventing translation of two of the four potentially nonprotective peptides reduced KIR3DL1+ NK clone–mediated autologous lysis.
Preparation of NK Cells and NK Cell Clones.
Analysis of NK Clone Allospecificity.
Vector Preparation; Transfer and Selection of Transduced Cells.
PCR.
Peptide Pulsing of RMA–S-B27 Cells.
HLA Typing of Donors Used in This Study.
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Materials and Methods
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Abstract
Materials and Methods
Results and Discussion
References
Immunofluorescence and Flow Cytometry.
Indirect immunofluorescence with primary mAb plus secondary fluorochrome-conjugated goat anti–mouse Ig antibodies (Southern Biotechnology Associates) and flow cytometry (FACSCaliburTM; Becton Dickinson) determined NK cell phenotypes. NK cell clones were identified using an anti-CD16 mAb (Immunotech). Expression of KIRs recognizing group 1 HLA-C alleles (KIR2DL2), group 2 HLA-C alleles (KIR2DL1), and HLA-Bw4 alleles (KIR3DL1) was determined with mAb EB6, GL183, and Z27, respectively (29) (provided by L. Moretta, University of Genova, Italy). Anti-HLA class I mAb and ME1 and B27M2 anti–HLA-B27 mAb were obtained from American Type Culture Collection (ATCC).
NK cell–enriched preparations were obtained from PBMC by negative immunomagnetic selection (Dynal) of T cells, B cells, and monocytes with anti-CD3, -CD20, and -CD14 mAb (Immunotech) and were cultured with 100 U/ml rIL-2 for 4–6 d before cell-killing assays. For NK cell cloning, PBMC depleted of T cells by negative immunomagnetic selection with anti-CD3 mAb (OKT3; obtained from ATCC) were plated at the concentration of 10 cells/well in 96-well microtiter plates, activated with PHA, and cultured with IL-2 and irradiated feeder cells as described elsewhere (30). Bulk-cultured and -cloned NK cells were used as effectors in standard (30) 51Cr-release cytotoxicity assays using autologous gene–transferred T cells as targets. E/T ratio was 10:1.
Standard 51Cr-release cytotoxicity assays against cell lines transfected with class I genes (provided by L. Moretta) determined NK clone allospecificity. Specificity for group 1 (Cw4-related) and group 2 (Cw3-related) HLA-C allotypes was analyzed using the HLA class I–negative cell line 721.221 and 721.221 cells transfected with Cw*0401 or Cw*0302 genes, respectively (31). Specificity for HLA-Bw4 allotypes (such as HLA-B27) was analyzed using untransfected C1R cells and C1R cells transfected with B*2705 gene (29). Specificity for the nonclassical MHC class Ib molecule HLA-E was analyzed using C1R cells expressing HLA-B7 (29) (cell surface expression of HLA-E is regulated by the binding of peptides derived from the signal sequence of some other MHC class I molecules, such as HLA-B7) (3). E/T ratio was 10:1. Results are presented as percent inhibition compared with lysis of the untransfected 721.221 or C1R cells. Clones lysed the untransfected cells at levels exceeding 60%, whereas lysis of autologous cells (PHA lymphoblasts) never exceeded 5%. NK clones were considered specific for a given allotype when cytotoxicity was <50% of control lysis obtained against untransfected cells.
The PA317 amphotropic packaging cell line was transfected with the pLXSN retroviral plasmid (32), G418-selected, and subcloned. A high retroviral titer clone was used to infect cells. To construct a retroviral vector unable to produce the neo protein, the SV40neo transcriptional unit was deleted from the LXSN plasmid by BamH1–Nae1 restriction digestion, Klenow blunting, and religation. The modified plasmid was transiently transfected in Phoenix amphotropic packaging cells (33) to produce retroviral particles. To construct a retroviral vector carrying a neo gene encoding a mutated protein that cannot produce potentially nonprotective peptides, the 209 cystine TGT codon of the neo gene was mutated to TGA to truncate the reading frame. The LXSN plasmid was consequently used as a template in a PCR reaction with the following mutagenizing oligonucleotides: 5'-TGCAAAAAGCTTGGGCTGCAGGTC, 3'-CCCAGCCGGCCTCAGTCGATGAATC. The PCR product was cloned and replaced in the original LXSN plasmid at the Hind III–NgoIV fragment. The final plasmid was sequenced to ensure that the open reading frame of the neo gene was maintained throughout the cDNA to the new stop codon. The plasmid was used to transiently transfect Phoenix cells and produce retroviral particles. PHA-activated, 48-h IL-2–cultured T cells (PBMC forming rosettes with SRBC) were infected by repeated cycles of centrifugation in the presence of viral supernatants. For cloning, T cells were plated at the concentration of 0.5 cells/well in 96-well microtiter plates and cultured with 100 U/ml IL-2 and irradiated feeder cells. The gene-transferred T cell clones were identified by PCR on DNA.
For PCR on DNA, 105 lymphocytes were lysed in 100 ml of a buffer containing 10 mM Tris/HCl, 50 mM KCl, 2.5 mM MgCl2, 0.1% gelatin, 0.45% NP40, 0.45% Tween 20, and 100 mg/ml proteinase K. 10 ml of extract was used for a PCR reaction with the following
region primers: 5'-TGGTTCTGGTAGGAGACGAG, 3'-GCTTCCCAGGTCACGATGTA. Reverse transcriptase (RT)-PCR was performed with published neo primers (34).
Peptides were synthesized by solid-phase method on an automated multiple peptide synthesizer (AMS 422; Aimed) using F-moc chemistry (35). Purity was confirmed by reverse-phase HPLC. TAP2-deficient RMA-S cells transfected with the human β2m alone (referred to in this report as RMA-S) or in combination with the HLA-B*2705 class I gene (RMA–S–B27) were cultured for 24 h at 26°C (8). Peptides were added in two separate doses: 100 µM at the onset of the experiment and an additional 100 µM 12 h later. Peptide loading was documented by surface stabilization of HLA-B27 as measured by immunofluorescence and flow cytometry. RMA-S and RMA-S–B27 cells were 51Cr-labeled overnight during the peptide pulsing. After labeling, cells were used as targets in standard cell-killing assays with KIR3DL1+ NK clones as effectors (30). Some cytolytic assays were performed in the presence of Z27 anti-KIR3DL1 mAb (500 ng/ml) (29).
Donor 1: A2/A33, B52/B35, Cw4; donor 2: A2/A11, B51/B27, Cw2; donor 3: A2/A28, B44/B18, Cw5/Cw7; donor 4: A11/A28, B8/B35, Cw4/Cw7.
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Results and Discussion
Top
Abstract
Materials and Methods
Results and Discussion
References
LXSN Infection Confers Susceptibility to Lysis by Autologous NK Cells.
Peripheral blood T lymphocytes were infected with LXSN, and the transduced cells were selected in G418. The selected cells as well as nontransduced control cells were used as targets in cytotoxicity assays with autologous IL-2–cultured NK cells as effectors. Transfer of LXSN conferred susceptibility to lysis by autologous NK cells in three consecutive, independent experiments (Fig. 1 A).
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The Selectable Marker Gene, neo, Is Responsible for NK Cell Lysis of Autologous LXSN-infected Cells.
The next step was to identify whether expression of the heterologous selectable marker gene, neo, or the defective retroviral mRNA itself (through translation of short open reading frames) was responsible for susceptibility of LXSN-infected cells to lysis. To this end, we measured NK killing of autologous T lymphocytes transduced with the same retroviral vector that did not contain the neo cDNA. T cells underwent the gene transfer procedure and were cloned by limiting dilution. Cells infected with LXSN were also cloned by limiting dilution without antibiotic selection. PCR on DNA identified neo-positive, "empty" vector–positive, and nontransduced control targets for autologous NK cell–mediated killing (Fig. 2 B). neo expression was confirmed by RT-PCR. Remarkably, all of the neo-transduced clones and none of the empty vector–transduced clones (and none of the noninfected control clones) were killed by autologous NK cells. Therefore, within the LXSN retroviral vector, the neo gene was responsible for conferring susceptibility to NK lysis.
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Neo Peptides Prevent KIR3DL1 Recognition of HLA-Bw4 Alleles.
Recognition of the Bw4 allele HLA-B27 by KIR3DL1 is the most extensively studied model of peptide-specific recognition of MHC class I by NK cells (8– 10). A comparison of the amino acid sequence of the neo protein with sequences of peptides reported to block recognition of HLA-B27 by KIR3DL1 (Table II) showed that several nonamers within the neo protein possess (i) anchor residues at positions 2 and 9 that allow binding to HLA-B27 (36) and (ii) residues at positions 7 and/or 8 that are known to prevent KIR3DL1-mediated recognition of HLA-B27 (8–10). In addition, other P7 and/or P8 residues that prevent recognition of HLA-B27 were present within neo peptides anchoring to Bw4 alleles of the other donors (Table II).
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1/5 of the protein reduced lysis by over 60%. Importantly, the deleted fragment did not contain other HLA-B27–binding peptides with P7 and/or P8 residues that could have triggered autologous NK lysis. Therefore, the reduction of NK-mediated lysis of autologous T lymphocytes infected with the mutated vector must be attributed to the deletion of the two nonprotective peptides.
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The fact that 721.221 or C1R cells commonly transfected with class I genes for NK recognition employ neo selection may seem perplexing and opens the question as to why these cells, when they express Bw4 alleles, are not rendered susceptible to lysis by neo peptides. Our data show that the susceptibility to lysis conferred by the neo gene is limited. On the other hand, the degree of protection conferred to 721.221 or C1R cells by class I transfection seldom reaches the 100% level of unmanipulated autologous cells, even when NK clones with single class I allele specificity are used. It is therefore plausible that the neo gene also partially antagonizes the protective effect of Bw4 allele expression in 721.221 or C1R cells.
The fact that clones with specificity for Bw4 allotypes were responsible for killing autologous LXSN-infected cells implies that it should be possible to predict that HLA-Bw4+ individuals may possess an NK cell repertoire with potential to clear gene therapy–modified cells. Individuals (like donor 4) homozygous for the reciprocal group of HLA-B allotypes, Bw6, should tolerate the engineered cells. Assessment of the impact of the present findings on survival of gene-transferred cells will require monitoring of gene expression at serial times after the reintroduction of engineered cells in vivo. We had the opportunity to evaluate two patients with adenosine deaminase deficiency undergoing adenosine deaminase gene therapy with the LXSN vector (carrying neo) (26). One patient expressed alleles of the Bw4 and Bw6 groups, and the other was homozygous for Bw6 alleles. Both patients had undergone gene therapy simultaneously 4 mo before our assessment. The HLA-Bw4+ patient, compared with the HLA-Bw6+ patient, exhibited 100-fold lower levels of the transduced gene.
Finally, our observations, by demonstrating that NK cells can selectively detect the expression of heterologous genes, provide a general model of the NK cell–mediated control of viral infections.
| Acknowledgments |
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This work was supported by grants from Associazione Italiana per la Ricerca sul Cancro (AIRC) and from the Telethon Foundation. I. Volpi and L. Ruggeri are supported by fellowships from Fondazione Italiana per la Ricerca sul Cancro (FIRC).
Submitted: 13 August 1998
Revised: 22 March 1999
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