Published online
doi:10.1084/jem.20072682
The Journal of Experimental Medicine
The Rockefeller University Press, 0022-1007 $30.00
© Ehrhardt et al.
Discriminating gene expression profiles of memory B cell subpopulations
Götz R.A. Ehrhardt1,2,
Atsushi Hijikata5,
Hiroshi Kitamura5,
Osamu Ohara5,
Ji-Yang Wang6, and
Max D. Cooper1,2,3,4
1 Department of Pathology and Laboratory Medicine and 2 Emory Vaccine Center, Emory University School of Medicine, Atlanta, GA 30322
3 Georgia Research Alliance, Atlanta, GA 30303
4 Emory Center for AIDS Research, Rollins School of Public Health, Emory University, Atlanta, GA 30322
5 Immunogenomics Group and 6 Laboratory for Immune Diversity, RIKEN Center for Allergy and Immunology, Tsurumi-ku, Yokohama City, Kanagawa 230-0045, Japan
CORRESPONDENCE Max D. Cooper: Max.Cooper{at}emory.edu
Morphologically and functionally distinct subpopulations of human memory B (BMem) cells are identifiable by either their expression of CD27 or Fc receptor–like 4 (FCRL4), an immunoglobulin domain containing a receptor with strong inhibitory potential. We have conducted comparative transcriptome and proteome analyses of FCRL4+ and FCRL4– BMem cells and found that these two subsets have very distinctive expression profiles for genes encoding transcription factors, cell-surface proteins, intracellular signaling molecules, and modifiers of the cell-cycle status. Among the differentially expressed transcription factors, runt-related transcription factor 1 (RUNX1) transcript levels were up-regulated in FCRL4– cells, whereas RUNX2 transcripts were preferentially detected in FCRL4+ cells. In vitro evidence for FCRL4 promoter responsiveness and in vivo promoter occupancy suggested that RUNX transcription factors are involved in the generation of these BMem cell subpopulations. A distinctive signature profile was defined for the FCRL4+ BMem cells by their expression of CD11c, receptor activator for nuclear factor
B ligand, and FAS cell-surface proteins, in combination with increased levels of SOX5, RUNX2, DLL1, and AICDA expression. We conclude that this recently identified subpopulation of BMem cells, which normally resides in epithelial tissue-based niches, may serve a unique role in mucosal defense and, conversely, as a target for neoplastic transformation events.
Abbreviations used: AICDA, activation-induced cytidine deaminase; BMem, memory B; CBFβ, core-binding factor β; ChIP, chromatin immunoprecipitation; DLL1, delta-like 1; FCRL, Fc receptor like; GC, germinal center; HCK, hemopoietic cell kinase; LCK, lymphocyte-specific protein tyrosine kinase; RANKL, receptor activator for NF-
B ligand; RUNX, runt-related transcription factor; SHP, Src homology 2 domain–containing phosphatase; SOX5, SRY-box 5; XBP1, X-box binding protein 1.
© 2008 Ehrhardt et al. This article is distributed under the terms of an Attribution–Noncommercial–Share Alike–No Mirror Sites license for the first six months after the publication date (see http://www.jem.org/misc/terms.shtml). After six months it is available under a Creative Commons License (Attribution–Noncommercial–Share Alike 3.0 Unported license, as described at http://creativecommons.org/licenses/by-nc-sa/3.0/).

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