Published online
doi:10.1084/jem.20081127
The Journal of Experimental Medicine, Vol. 206, No. 4, 923-936
The Rockefeller University Press, 0022-1007 $30.00
© Price et al.
Public clonotype usage identifies protective Gag-specific CD8+ T cell responses in SIV infection
David A. Price1,4,
Tedi E. Asher1,
Nancy A. Wilson5,
Martha C. Nason2,
Jason M. Brenchley1,3,
Ian S. Metzler1,
Vanessa Venturi6,
Emma Gostick4,
Pratip K. Chattopadhyay1,
Mario Roederer1,
Miles P. Davenport6,
David I. Watkins5, and
Daniel C. Douek1
1 Vaccine Research Center, 2 Biostatistics Research Branch, and 3 Laboratory of Molecular Microbiology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892
4 Department of Medical Biochemistry and Immunology, Cardiff University School of Medicine, Cardiff CF14 4XN, Wales, UK
5 Wisconsin National Primate Research Center, University of Wisconsin, Madison, WI 53711
6 Centre for Vascular Research, University of New South Wales, Kensington 2052, Sydney, Australia
CORRESPONDENCE David A. Price: dprice1{at}mail.nih.gov OR Daniel C. Douek: ddouek{at}mail.nih.gov
Despite the pressing need for an AIDS vaccine, the determinants of protective immunity to HIV remain concealed within the complexity of adaptive immune responses. We dissected immunodominant virus-specific CD8+ T cell populations in Mamu-A*01+ rhesus macaques with primary SIV infection to elucidate the hallmarks of effective immunity at the level of individual constituent clonotypes, which were identified according to the expression of distinct T cell receptors (TCRs). The number of public clonotypes, defined as those that expressed identical TCR β-chain amino acid sequences and recurred in multiple individuals, contained within the acute phase CD8+ T cell population specific for the biologically constrained Gag CM9 (CTPYDINQM; residues 181–189) epitope correlated negatively with the virus load set point. This independent molecular signature of protection was confirmed in a prospective vaccine trial, in which clonotype engagement was governed by the nature of the antigen rather than the context of exposure and public clonotype usage was associated with enhanced recognition of epitope variants. Thus, the pattern of antigen-specific clonotype recruitment within a protective CD8+ T cell population is a prognostic indicator of vaccine efficacy and biological outcome in an AIDS virus infection.
Abbreviations used: Ad5, adenovirus serotype 5; i.m., intramuscularly; PI, postinfection; PV, postvaccination; pVL, plasma virus load.
© 2009 The Rockefeller University Press
This article is distributed under the terms of an Attribution–Noncommercial–Share Alike–No Mirror Sites license for the first six months after the publication date (see http://www.jem.org/misc/terms.shtml). After six months it is available under a Creative Commons License (Attribution–Noncommercial–Share Alike 3.0 Unported license, as described at http://creativecommons.org/licenses/by-nc-sa/3.0/).

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