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Published online 27 February 2006 doi:10.1084/jem.20051777
Rockefeller University Press, 0022-1007 $8.00
JEM, Volume 203, Number 3, 661-673
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ARTICLE

A structural basis for selection and cross-species reactivity of the semi-invariant NKT cell receptor in CD1d/glycolipid recognition

Lars Kjer-Nielsen1, Natalie A. Borg2, Daniel G. Pellicci1, Travis Beddoe2, Lyudmila Kostenko1, Craig S. Clements2, Nicholas A. Williamson1, Mark J. Smyth3, Gurdyal S. Besra4, Hugh H. Reid2, Mandvi Bharadwaj1, Dale I. Godfrey1, Jamie Rossjohn2, and James McCluskey1

1 Department of Microbiology and Immunology, University of Melbourne, Parkville, Victoria 3010, Australia
2 The Protein Crystallography Unit, ARC Centre of Excellence in Structural and Functional Microbial Genomics, Department of Biochemistry and Molecular Biology, School of Biomedical Sciences, Monash University, Clayton, Victoria 3800, Australia
3 Cancer Immunology Program, Peter MacCallum Cancer Centre, St. Andrew's Place, East Melbourne, Victoria 3002, Australia
4 School of Biosciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, England, UK

CORRESPONDENCE James McCluskey: jamesm1{at}unimelb.edu.au OR Jamie Rossjohn: Jamie.Rossjohn{at}med.monash.edu.au

Little is known regarding the basis for selection of the semi-invariant {alpha}ß T cell receptor (TCR) expressed by natural killer T (NKT) cells or how this mediates recognition of CD1d–glycolipid complexes. We have determined the structures of two human NKT TCRs that differ in their CDR3ß composition and length. Both TCRs contain a conserved, positively charged pocket at the ligand interface that is lined by residues from the invariant TCR {alpha}- and semi-invariant ß-chains. The cavity is centrally located and ideally suited to interact with the exposed glycosyl head group of glycolipid antigens. Sequences common to mouse and human invariant NKT TCRs reveal a contiguous conserved "hot spot" that provides a basis for the reactivity of NKT cells across species. Structural and functional data suggest that the CDR3ß loop provides a plasticity mechanism that accommodates recognition of a variety of glycolipid antigens presented by CD1d. We propose a model of NKT TCR–CD1d–glycolipid interaction in which the invariant CDR3{alpha} loop is predicted to play a major role in determining the inherent bias toward CD1d. The findings define a structural basis for the selection of the semi-invariant {alpha}ß TCR and the unique antigen specificity of NKT cells.


Abbreviations used: {alpha}-GalCer, {alpha}-galactosylceramide; Ag, antigen; BSA, buried surface area; C, constant; CDR, complementarity-determining region; hCD1d, human CD1d; mCD1d, mouse CD1d; RMS, root mean square; SPR, surface plasmon resonance; V, variable.

L. Kjer-Nielsen and N.A. Borg contributed equally to this work.

J. McCluskey and J. Rossjohn contributed equally to this work.


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