Published 20 December 2004. doi:10.1084/jem.20041006
Rockefeller University Press, 0022-1007 $8.00
JEM, Volume 200, Number 12, 1593-1604
CD8 Epitope Escape and Reversion in Acute HCV Infection
Joerg Timm1,
Georg M. Lauer1,
Daniel G. Kavanagh1,
Isabelle Sheridan3,
Arthur Y. Kim1,
Michaela Lucas3,
Thillagavathie Pillay3,
Kei Ouchi1,
Laura L. Reyor1,
Julian Schulze zur Wiesch1,
Rajesh T. Gandhi1,
Raymond T. Chung2,
Nina Bhardwaj4,
Paul Klenerman3,
Bruce D. Walker1, and
Todd M. Allen1
1 Partners AIDS Research Center and Infectious Disease Division, Howard Hughes Medical Institute
2 Gastrointestinal Unit, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114
3 Nuffield Department of Clinical Medicine, Peter Medawar Building, University of Oxford, Oxford OX1 3SY, England, UK
4 New York University School of Medicine, New York, NY 10016
Address correspondence to Todd M. Allen, Partners AIDS Research Center, Massachusetts General Hospital, Harvard Medical School, Bldg. 149, 13th St., Rm. 6618 B, Boston, MA 02114. Phone: (617) 726-7846; Fax: (617) 724-8586; email: tallen2{at}partners.org
In the setting of acute hepatitis C virus (HCV) infection, robust HCV-specific CD8+ cytotoxic T lymphocyte (CTL) responses are associated with initial control of viremia. Despite these responses, 7080% of individuals develop persistent infection. Although viral escape from CD8 responses has been illustrated in the chimpanzee model of HCV infection, the effect of CD8 selection pressure on viral evolution and containment in acute HCV infection in humans remains unclear. Here, we examined viral evolution in an immunodominant human histocompatibility leukocyte antigen (HLA)-B8restricted NS3 epitope in subjects with acute HCV infection. Development of mutations within the epitope coincided with loss of strong ex vivo tetramer and interferon
enzyme-linked immunospot responses, and endogenous expression of variant NS3 sequences suggested that the selected mutations altered processing and presentation of the variant epitope. Analysis of NS3 sequences from 30 additional chronic HCV-infected subjects revealed a strong association between sequence variation within this region and expression of HLA-B8, supporting reproducible allele-specific selection pressures at the population level. Interestingly, transmission of an HLA-B8associated escape mutation to an HLA-B8 negative subject resulted in rapid reversion of the mutation. Together, these data indicate that viral escape from CD8+ T cell responses occurs during human HCV infection and that acute immune selection pressure is of sufficient magnitude to influence HCV evolution.
Key Words: HLA footprint processing mutation viral evolution acute hepatitis C CD8 escape
J. Timm and G.M. Lauer contributed equally to this work.
Abbreviations used in this paper: HCV, hepatitis C virus; ICS, intracellular cytokine staining; ML, maximum likelihood.

CiteULike
Complore
Connotea
Del.icio.us
Digg
Reddit
Technorati What's this?
This article has been cited by other articles:
-
Turnbull, E. L., Wong, M., Wang, S., Wei, X., Jones, N. A., Conrod, K. E., Aldam, D., Turner, J., Pellegrino, P., Keele, B. F., Williams, I., Shaw, G. M., Borrow, P.
(2009). Kinetics of Expansion of Epitope-Specific T Cell Responses during Primary HIV-1 Infection. J. Immunol.
182: 7131-7145
[Abstract]
[Full Text]
-
Rutebemberwa, A., Ray, S. C., Astemborski, J., Levine, J., Liu, L., Dowd, K. A., Clute, S., Wang, C., Korman, A., Sette, A., Sidney, J., Pardoll, D. M., Cox, A. L.
(2008). High-Programmed Death-1 Levels on Hepatitis C Virus-Specific T Cells during Acute Infection Are Associated with Viral Persistence and Require Preservation of Cognate Antigen during Chronic Infection. J. Immunol.
181: 8215-8225
[Abstract]
[Full Text]
-
Salloum, S., Oniangue-Ndza, C., Neumann-Haefelin, C., Hudson, L., Giugliano, S., aus dem Siepen, M., Nattermann, J., Spengler, U., Lauer, G. M., Wiese, M., Klenerman, P., Bright, H., Scherbaum, N., Thimme, R., Roggendorf, M., Viazov, S., Timm, J.
(2008). Escape from HLA-B*08-Restricted CD8 T Cells by Hepatitis C Virus Is Associated with Fitness Costs. J. Virol.
82: 11803-11812
[Abstract]
[Full Text]
-
Youn, J.-W., Hu, Y.-W., Tricoche, N., Pfahler, W., Shata, M. T., Dreux, M., Cosset, F.-L., Folgori, A., Lee, D.-H., Brotman, B., Prince, A. M.
(2008). Evidence for Protection against Chronic Hepatitis C Virus Infection in Chimpanzees by Immunization with Replicating Recombinant Vaccinia Virus. J. Virol.
82: 10896-10905
[Abstract]
[Full Text]
-
Yerly, D., Heckerman, D., Allen, T., Suscovich, T. J., Jojic, N., Kadie, C., Pichler, W. J., Cerny, A., Brander, C.
(2008). Design, Expression, and Processing of Epitomized Hepatitis C Virus-Encoded CTL Epitopes. J. Immunol.
181: 6361-6370
[Abstract]
[Full Text]
-
Wolfl, M., Rutebemberwa, A., Mosbruger, T., Mao, Q., Li, H.-m., Netski, D., Ray, S. C., Pardoll, D., Sidney, J., Sette, A., Allen, T., Kuntzen, T., Kavanagh, D. G., Kuball, J., Greenberg, P. D., Cox, A. L.
(2008). Hepatitis C Virus Immune Escape via Exploitation of a Hole in the T Cell Repertoire. J. Immunol.
181: 6435-6446
[Abstract]
[Full Text]
-
Irausquin, S. J., Hughes, A. L.
(2008). Distinctive pattern of sequence polymorphism in the NS3 protein of hepatitis C virus type 1b reflects conflicting evolutionary pressures. J. Gen. Virol.
89: 1921-1929
[Abstract]
[Full Text]
-
Neumann-Haefelin, C., Frick, D. N., Wang, J. J., Pybus, O. G., Salloum, S., Narula, G. S., Eckart, A., Biezynski, A., Eiermann, T., Klenerman, P., Viazov, S., Roggendorf, M., Thimme, R., Reiser, M., Timm, J.
(2008). Analysis of the Evolutionary Forces in an Immunodominant CD8 Epitope in Hepatitis C Virus at a Population Level. J. Virol.
82: 3438-3451
[Abstract]
[Full Text]
-
Butler, N. S., Dandekar, A. A., Perlman, S.
(2007). Antiviral Antibodies Are Necessary To Prevent Cytotoxic T-Lymphocyte Escape in Mice Infected with a Coronavirus. J. Virol.
81: 13291-13298
[Abstract]
[Full Text]
-
Brockman, M. A., Schneidewind, A., Lahaie, M., Schmidt, A., Miura, T., DeSouza, I., Ryvkin, F., Derdeyn, C. A., Allen, S., Hunter, E., Mulenga, J., Goepfert, P. A., Walker, B. D., Allen, T. M.
(2007). Escape and Compensation from Early HLA-B57-Mediated Cytotoxic T-Lymphocyte Pressure on Human Immunodeficiency Virus Type 1 Gag Alter Capsid Interactions with Cyclophilin A. J. Virol.
81: 12608-12618
[Abstract]
[Full Text]
-
Schneidewind, A., Brockman, M. A., Yang, R., Adam, R. I., Li, B., Le Gall, S., Rinaldo, C. R., Craggs, S. L., Allgaier, R. L., Power, K. A., Kuntzen, T., Tung, C.-S., LaBute, M. X., Mueller, S. M., Harrer, T., McMichael, A. J., Goulder, P. J. R., Aiken, C., Brander, C., Kelleher, A. D., Allen, T. M.
(2007). Escape from the Dominant HLA-B27-Restricted Cytotoxic T-Lymphocyte Response in Gag Is Associated with a Dramatic Reduction in Human Immunodeficiency Virus Type 1 Replication. J. Virol.
81: 12382-12393
[Abstract]
[Full Text]
-
Kuntzen, T., Timm, J., Berical, A., Lewis-Ximenez, L. L., Jones, A., Nolan, B., Schulze zur Wiesch, J., Li, B., Schneidewind, A., Kim, A. Y., Chung, R. T., Lauer, G. M., Allen, T. M.
(2007). Viral Sequence Evolution in Acute Hepatitis C Virus Infection. J. Virol.
81: 11658-11668
[Abstract]
[Full Text]
-
Schulze zur Wiesch, J., Lauer, G. M., Timm, J., Kuntzen, T., Neukamm, M., Berical, A., Jones, A. M., Nolan, B. E., Longworth, S. A., Kasprowicz, V., McMahon, C., Wurcel, A., Lohse, A. W., Lewis-Ximenez, L. L., Chung, R. T., Kim, A. Y., Allen, T. M., Walker, B. D.
(2007). Immunologic evidence for lack of heterologous protection following resolution of HCV in patients with non genotype 1 infection. Blood
110: 1559-1569
[Abstract]
[Full Text]
-
Donlin, M. J., Cannon, N. A., Yao, E., Li, J., Wahed, A., Taylor, M. W., Belle, S. H., Di Bisceglie, A. M., Aurora, R., Tavis, J. E., for the Virahep-C Study Group,
(2007). Pretreatment Sequence Diversity Differences in the Full-Length Hepatitis C Virus Open Reading Frame Correlate with Early Response to Therapy. J. Virol.
81: 8211-8224
[Abstract]
[Full Text]
-
Neumann-Haefelin, C., Killinger, T., Timm, J., Southwood, S., McKinney, D., Blum, H. E., Thimme, R.
(2007). Absence of viral escape within a frequently recognized HLA-A26-restricted CD8+ T-cell epitope targeting the functionally constrained hepatitis C virus NS5A/5B cleavage site. J. Gen. Virol.
88: 1986-1991
[Abstract]
[Full Text]
-
Wang, X.-H., Netski, D. M., Astemborski, J., Mehta, S. H., Torbenson, M. S., Thomas, D. L., Ray, S. C.
(2007). Progression of Fibrosis during Chronic Hepatitis C Is Associated with Rapid Virus Evolution. J. Virol.
81: 6513-6522
[Abstract]
[Full Text]
-
Bengsch, B., Spangenberg, H. C., Kersting, N., Neumann-Haefelin, C., Panther, E., von Weizsacker, F., Blum, H. E., Pircher, H., Thimme, R.
(2007). Analysis of CD127 and KLRG1 Expression on Hepatitis C Virus-Specific CD8+ T Cells Reveals the Existence of Different Memory T-Cell Subsets in the Peripheral Blood and Liver. J. Virol.
81: 945-953
[Abstract]
[Full Text]
-
Li, B., Gladden, A. D., Altfeld, M., Kaldor, J. M., Cooper, D. A., Kelleher, A. D., Allen, T. M.
(2007). Rapid Reversion of Sequence Polymorphisms Dominates Early Human Immunodeficiency Virus Type 1 Evolution. J. Virol.
81: 193-201
[Abstract]
[Full Text]
-
Gaudieri, S., Rauch, A., Park, L. P., Freitas, E., Herrmann, S., Jeffrey, G., Cheng, W., Pfafferott, K., Naidoo, K., Chapman, R., Battegay, M., Weber, R., Telenti, A., Furrer, H., James, I., Lucas, M., Mallal, S. A., and the Swiss HIV Cohort Study,
(2006). Evidence of Viral Adaptation to HLA Class I-Restricted Immune Pressure in Chronic Hepatitis C Virus Infection.. J. Virol.
80: 11094-11104
[Abstract]
[Full Text]
-
Yao, W, Hertel, L, Wahl, L.M
(2006). Dynamics of recurrent viral infection. Proc R Soc B
273: 2193-2199
[Abstract]
[Full Text]
-
Klenerman, P, Semmo, N
(2006). Cellular immune responses against persistent hepatitis C virus: gone but not forgotten. Gut
55: 914-916
[Full Text]
-
Suarez, F., Lortholary, O., Hermine, O., Lecuit, M.
(2006). Infection-associated lymphomas derived from marginal zone B cells: a model of antigen-driven lymphoproliferation. Blood
107: 3034-3044
[Abstract]
[Full Text]
-
Soderholm, J, Ahlen, G, Kaul, A, Frelin, L, Alheim, M, Barnfield, C, Liljestrom, P, Weiland, O, Milich, D R, Bartenschlager, R, Sallberg, M
(2006). Relation between viral fitness and immune escape within the hepatitis C virus protease. Gut
55: 266-274
[Abstract]
[Full Text]
-
Urbani, S., Amadei, B., Cariani, E., Fisicaro, P., Orlandini, A., Missale, G., Ferrari, C.
(2005). The Impairment of CD8 Responses Limits the Selection of Escape Mutations in Acute Hepatitis C Virus Infection. J. Immunol.
175: 7519-7529
[Abstract]
[Full Text]
-
Lauer, G. M., Lucas, M., Timm, J., Ouchi, K., Kim, A. Y., Day, C. L., zur Wiesch, J. S., Paranhos-Baccala, G., Sheridan, I., Casson, D. R., Reiser, M., Gandhi, R. T., Li, B., Allen, T. M., Chung, R. T., Klenerman, P., Walker, B. D.
(2005). Full-Breadth Analysis of CD8+ T-Cell Responses in Acute Hepatitis C Virus Infection and Early Therapy. J. Virol.
79: 12979-12988
[Abstract]
[Full Text]
-
Wieland, S. F., Chisari, F. V.
(2005). Stealth and Cunning: Hepatitis B and Hepatitis C Viruses. J. Virol.
79: 9369-9380
[Full Text]
-
Bowen, D. G., Walker, C. M.
(2005). Mutational escape from CD8+ T cell immunity: HCV evolution, from chimpanzees to man. JEM
201: 1709-1714
[Abstract]
[Full Text]
-
Tester, I., Smyk-Pearson, S., Wang, P., Wertheimer, A., Yao, E., Lewinsohn, D. M., Tavis, J. E., Rosen, H. R.
(2005). Immune evasion versus recovery after acute hepatitis C virus infection from a shared source. JEM
201: 1725-1731
[Abstract]
[Full Text]
-
Cox, A. L., Mosbruger, T., Mao, Q., Liu, Z., Wang, X.-H., Yang, H.-C., Sidney, J., Sette, A., Pardoll, D., Thomas, D. L., Ray, S. C.
(2005). Cellular immune selection with hepatitis C virus persistence in humans. JEM
201: 1741-1752
[Abstract]
[Full Text]
-
Ray, S. C., Fanning, L., Wang, X.-H., Netski, D. M., Kenny-Walsh, E., Thomas, D. L.
(2005). Divergent and convergent evolution after a common-source outbreak of hepatitis C virus. JEM
201: 1753-1759
[Abstract]
[Full Text]