The Journal of Experimental Medicine
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Published online 25 June 2001. doi:10.1084/jem.194.1.1
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© The Rockefeller University Press, 0022-1007/2001/7/1/ $5.00
The Journal of Experimental Medicine, Volume 194, Number 1, July 2, 2001 1-12


Original Article

Discrete Cleavage Motifs of Constitutive and Immunoproteasomes Revealed by Quantitative Analysis of Cleavage Products

R.E.M. Toesc, A.K. Nussbauma, S. Degermanne, M. Schirlea, N.P.N. Emmericha, M. Krafta, C. Laplacee, A. Zwindermanc, T.P. Dickd, J. Müllerb, B. Schönfischb, C. Schmida, H.-J. Fehlingf, S. Stevanovica, H.G. Rammenseea, and H. Schilda
a Institute for Cell Biology, Department of Immunology
b Biomathematik, University of Tübingen, D-72076 Tübingen, Germany
c Department of Immunohematology and Blood Transfusion, Department of Rheumatology, Leiden University Medical Center, 2333 ZA Leiden, Netherlands
d Section of Immunobiology, Howard Hughes Medical Institute, Yale University School of Medicine, New Haven, CT 06520
e Basel Institute for Immunology, CH-4005 Basel, Switzerland
f Department of Immunology, Medical Faculty/University Clinics Ulm, D-89070 Ulm, Germany

Correspondence to: H. Schild, Institute for Cell Biology, Dept. of Immunology, University of Tübingen, Auf der Morgenstelle 15, D-72076 Tübingen, Germany. Tel:49-7071-2980-992 Fax:49-7071-2956-53 E-mail:hansjoerg.schild{at}uni-tuebingen.de.

Proteasomes are the main proteases responsible for cytosolic protein degradation and the production of major histocompatibility complex class I ligands. Incorporation of the interferon {gamma}–inducible subunits low molecular weight protein (LMP)-2, LMP-7, and multicatalytic endopeptidase complex–like (MECL)-1 leads to the formation of immunoproteasomes which have been associated with more efficient class I antigen processing. Although differences in cleavage specificities of constitutive and immunoproteasomes have been observed frequently, cleavage motifs have not been described previously.

We now report that cells expressing immunoproteasomes display a different peptide repertoire changing the overall cytotoxic T cell–specificity as indicated by the observation that LMP-7-/- mice react against cells of LMP-7 wild-type mice. Moreover, using the 436 amino acid protein enolase-1 as an unmodified model substrate in combination with a quantitative approach, we analyzed a large collection of peptides generated by either set of proteasomes. Inspection of the amino acids flanking proteasomal cleavage sites allowed the description of two different cleavage motifs. These motifs finally explain recent findings describing differential processing of epitopes by constitutive and immunoproteasomes and are important to the understanding of peripheral T cell tolerization/activation as well as for effective vaccine development.

Key Words: constitutive proteasomes, immunoproteasomes, CTL epitope, peptide repertoire, tolerance


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